PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g23710.1.p | ||||||||
Common Name | BRADI_2g23710, LOC100826230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 302aa MW: 32874.8 Da PI: 6.8634 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.9 | 1.9e-07 | 30 | 73 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W++ E +l+ +a ++ g+ +W+++a+ ++ g++ ++ ++ Bradi2g23710.1.p 30 AWSPAENKLFEEALARVDGDapgRWERVAALLP-GKSVADVMAHY 73 7********************************.********999 PP | |||||||
2 | Myb_DNA-binding | 45.7 | 1.5e-14 | 142 | 186 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky Bradi2g23710.1.p 142 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 186 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.023 | 26 | 80 | IPR017884 | SANT domain |
SMART | SM00717 | 3.2E-5 | 27 | 79 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.44E-8 | 29 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.8E-6 | 30 | 73 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.09E-6 | 30 | 73 | No hit | No description |
PROSITE profile | PS51294 | 17.568 | 135 | 191 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.35E-17 | 137 | 191 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-17 | 138 | 189 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.0E-12 | 139 | 185 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-13 | 139 | 189 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-12 | 142 | 186 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.83E-11 | 142 | 187 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MMKESWMEVL PLPPAPYLAG GWFLQEQQRA WSPAENKLFE EALARVDGDA PGRWERVAAL 60 LPGKSVADVM AHYDDLENDV GFIEAGLVPF PQYNGGGGGS PASGFTLDWD GGGDDLAFKR 120 SCYIVGGKRA RGPDQERKKG VPWTEEEHKL FLMGLKKYGR GDWRNISRNF VTSRTPTQVA 180 SHAQKYFIRL NSGGKDKRRS SIHDITTVNI PDDDHGSNPS PSPPSSVLTP NSSSGAAPPA 240 ISEQFGVLVD SKPQISRGGH HHFIPHLYGN VKLEASNGYH GGRLDDSVLM QMQCGQLQPL 300 G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-15 | 29 | 98 | 9 | 78 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00296 | DAP | Transfer from AT2G38090 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g23710.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094740 | 0.0 | FP094740.1 Phyllostachys edulis cDNA clone: bphylf046m24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568340.1 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 4e-81 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | I1HIW6 | 0.0 | I1HIW6_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G23710.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 | Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 3e-79 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g23710.1.p |
Entrez Gene | 100826230 |
Publications ? help Back to Top | |||
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