PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g23530.1.p
Common NameBRADI_2g23530, LOC100822848
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 586aa    MW: 62804.9 Da    PI: 8.6212
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g23530.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.21.9e-103644011954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  Bradi2g23530.1.p 364 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 401
                       554459******************************88 PP
2BELL95.54.8e-31223292372
              BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +e q +k++L+sl+eeV+krYkqy++qlq+vissFe+vagl +a+p++s+Al+++S+hF+ Lk +i +q+
  Bradi2g23530.1.p 223 AEQQWRKTRLISLMEEVCKRYKQYYQQLQAVISSFETVAGLSNAAPFASIALRTMSKHFKYLKGMIQSQL 292
                       58899**************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-37152290IPR006563POX domain
PfamPF075264.1E-37157288IPR006563POX domain
PROSITE profilePS5007112.455342405IPR001356Homeobox domain
CDDcd000866.72E-14345406No hitNo description
SMARTSM003891.4E-11345409IPR001356Homeobox domain
SuperFamilySSF466893.04E-17347412IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-29348409IPR009057Homeodomain-like
PfamPF059205.2E-19362401IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MSSAAGGGYG QQGGGGEHHQ HQHQHQLLLG QAAAGQLYHV PQHSRREKLR FPPDHPAADS  60
SSPTAPGSSS WPPPPPFYSY ASSSSSYSPH SPSSLAQAQA QLVAAHHGGM PPAGAQIPSQ  120
NFALSLSSSS SNPPPRRQLG GGGATGPYGP FTGYAAVLGR SRFLGPAQKL LEEICDVGSA  180
RPAHQADRAA GSADDGLLDM DAMDDVAHEM DSGDREAVTV SGAEQQWRKT RLISLMEEVC  240
KRYKQYYQQL QAVISSFETV AGLSNAAPFA SIALRTMSKH FKYLKGMIQS QLRNTSKQVA  300
VAGKDGLGKE DMANFGLMGG GASAGAALMR GSNVNAFGQQ PHNIWRPQRG LPERAVSVLR  360
AWLFEHFLHP YPTDSDKQML AKQTGLTRNQ VSNWFINARV RLWKPMVEEI HNLEMRQGHK  420
NSSVDKNHLG MQQTQHSPDS SGRPSDPSNS QQGQSSSMTR NHSAHGSRHI QNELSPMTHD  480
MPGQVSFAYN GLATHHNIAL SHPQQVLGVG VGGAGNSGGV SLTLGLHQDN RTYIAEPLPA  540
ALPLNLAHRF GLEDVSDAYV MGSFGSQDRH FTKEIGGHLL HDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-17351408158Homeobox protein Meis1
4xrs_B4e-17351408158Homeobox protein Meis1
5bng_A5e-17351409159Homeobox protein Meis2
5bng_B5e-17351409159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g23530.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568329.20.0BEL1-like homeodomain protein 9
TrEMBLA0A0Q3G6C20.0A0A0Q3G6C2_BRADI; Uncharacterized protein
STRINGBRADI2G23530.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.12e-64TALE family protein