PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi2g23320.3.p | ||||||||
Common Name | BRADI_2g23320, LOC100843050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 525aa MW: 58194.6 Da PI: 6.3926 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.4 | 1.9e-19 | 28 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ +vd vk++G++ W++Ia+ + gR +kqc++rw+++l Bradi2g23320.3.p 28 KGPWTQEEDDTIVDMVKKHGPRKWSLIAKSLD-GRIGKQCRERWHNHL 74 79******************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 63.5 | 4.2e-20 | 80 | 122 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WTteE++ lv+a++++G++ W+ Ia+ ++ gRt++++k++w+ Bradi2g23320.3.p 80 KEAWTTEEEQVLVKAHHLHGNR-WAEIAKLLP-GRTDNSIKNHWN 122 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.356 | 1 | 22 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-11 | 3 | 35 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 31.468 | 23 | 78 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.21E-31 | 25 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-17 | 27 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-17 | 28 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.26E-15 | 30 | 74 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-27 | 36 | 82 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-17 | 79 | 127 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 23.561 | 79 | 129 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.6E-18 | 80 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.74E-14 | 82 | 122 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-23 | 83 | 128 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 525 aa Download sequence Send to blast |
MKAESFPDRT EVQCLHRWQK VLDPELIKGP WTQEEDDTIV DMVKKHGPRK WSLIAKSLDG 60 RIGKQCRERW HNHLDPQIRK EAWTTEEEQV LVKAHHLHGN RWAEIAKLLP GRTDNSIKNH 120 WNSSVRKRID DYSTRTVMPV PLHATHIDLK HAAELSSAEN HIDLNKEPSI SLKDRPVIVD 180 HSDLIQSPRV CSLKNIKGCS DFLSLAMPTA QPLTLCEASV SDDSAVALAI MGLKMDSGHD 240 KDMQLKCVSE NSLEISLSNE RGLKIDLITN KMRPSGLGKS EGEIANIGCE SPSQNEAGSL 300 GSLCYWIPML DDTDLAHSPV FSTHNVRENS GIGFQSPTGY TTPSPTEGKK SDQLSVESIL 360 KSAAENFPST PSILRRRKRE KPTPAQDCEL RIETNSDSFE TPIGNFTTDS PHSFKTASFL 420 SFSHLDDQGL PADLGKCDVS PSYRLRSKRM AVLKTIEKHL DFSSDAMDIC DTSGVLKSAC 480 RNSESINSST DISSVEDEKM GAGHMIGLET LINDFAHTRK LDAS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-62 | 3 | 129 | 33 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-62 | 3 | 129 | 33 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 374 | 381 | RRRKREKP |
2 | 375 | 380 | RRKREK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi2g23320.3.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231306.1 | 0.0 | transcription factor MYB3R-2 isoform X3 | ||||
Refseq | XP_024315400.1 | 0.0 | transcription factor MYB3R-2 isoform X3 | ||||
Swissprot | Q0JHU7 | 1e-169 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | A0A0Q3QXM6 | 0.0 | A0A0Q3QXM6_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G23320.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G02320.2 | 9e-72 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi2g23320.3.p |
Entrez Gene | 100843050 |
Publications ? help Back to Top | |||
---|---|---|---|
|