PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g23310.2.p | ||||||||
Common Name | BRADI_2g23310, LOC100842747 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 602aa MW: 66454.9 Da PI: 7.8157 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.9 | 4.1e-17 | 58 | 104 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av + g++Wk+Ia+ ++ Rt+ qc +rwqk+l Bradi2g23310.2.p 58 KGGWTPEEDETLRKAVYAFKGKNWKKIAESFP-DRTEVQCLHRWQKVL 104 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 60 | 5.3e-19 | 110 | 156 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ++d vk++G++ W++Ia+ + gR +kqc++rw+++l Bradi2g23310.2.p 110 KGPWTQEEDNTIIDMVKKHGPRKWSLIAKSLD-GRIGKQCRERWHNHL 156 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 60.1 | 4.7e-19 | 162 | 204 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WTteE++ lv+a+++ G++ W+ Ia+ ++ gRt++++k++w+ Bradi2g23310.2.p 162 KEAWTTEEEQVLVKAHHLNGNR-WAEIAKLLP-GRTDNSIKNHWN 204 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.711 | 53 | 104 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-14 | 57 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 58 | 104 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.15E-15 | 59 | 114 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 60 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.73E-13 | 61 | 104 | No hit | No description |
PROSITE profile | PS51294 | 31.687 | 105 | 160 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.1E-30 | 107 | 203 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-17 | 109 | 158 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-17 | 110 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.29E-15 | 112 | 156 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-26 | 117 | 162 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.686 | 161 | 211 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-16 | 161 | 209 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-17 | 162 | 205 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-22 | 163 | 210 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.14E-13 | 164 | 204 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence Send to blast |
MGAMKVEERG GCTENRQHLA LSSPSASEGG GYGGLAGMSP ADSISGRRRT SGPVRRAKGG 60 WTPEEDETLR KAVYAFKGKN WKKIAESFPD RTEVQCLHRW QKVLDPELIK GPWTQEEDNT 120 IIDMVKKHGP RKWSLIAKSL DGRIGKQCRE RWHNHLDPQI RKEAWTTEEE QVLVKAHHLN 180 GNRWAEIAKL LPGRTDNSIK NHWNSSVRKR VEDYNNRVGM PVPQHAIHND LKHAAKLPPA 240 DNHIDLTKEQ SISLKDHMVI VDHSDAIQSP PVCCFKNIKG CSGFLSLSMP TAQPVTLYKT 300 SVSDDSAVAL GIMGLKMDSG HDKDMELKFV SEKGLAINLP NEKSPEIDLI TDKMGPSGLA 360 KSEGETANII CESPSQNEAR SFGSLCYLIP TQDDTDLARS PVFSTHHVRE HCGIGFQSPT 420 GYSTPSPRDG KKSNHLSVES ILRSAAENFP STPSILRRRK REKPTPAQDC ELRIDTNSDS 480 FETPIGNFTT DSPHSFKTAT LLSLGHLDDQ KLPAALGKFD VSPSYRLKSK RMAVLKTIEK 540 HLDFSSDAMD IYDSAGVLKS ACLSSESINS STDNSSVQDK KMGDHMIGLE TPTNDFVHKA 600 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-69 | 57 | 211 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-69 | 57 | 211 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 456 | 463 | RRRKREKP |
2 | 457 | 462 | RRKREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g23310.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363512 | 1e-158 | AK363512.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016D03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568308.1 | 0.0 | transcription factor MYB3R-2 | ||||
Swissprot | Q0JHU7 | 0.0 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | A0A0Q3G3R2 | 0.0 | A0A0Q3G3R2_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G23310.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 2e-95 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g23310.2.p |
Entrez Gene | 100842747 |
Publications ? help Back to Top | |||
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