PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g23136.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 121aa MW: 13064.9 Da PI: 9.0512 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 25 | 46 | 1 | 22 |
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 +kCp+C+++Fs++ L H+++ Bradi2g23136.1.p 25 FKCPYCSEVFSTHQALGGHMSK 46 89*****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 5.5E-8 | 25 | 45 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.559 | 25 | 59 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MAAPNGSTLN LCRSSASSCS RGRGFKCPYC SEVFSTHQAL GGHMSKRTCI DEPHRYQLPP 60 LPPTILPASP ILGALPTWLA PNPYFWEEYR RGGRRPVEIN FLGIPRSPDL VPANGNVSGT 120 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g23136.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K2D9Z0 | 9e-83 | A0A2K2D9Z0_BRADI; Uncharacterized protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g23136.1.p |