PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g22505.1.p | ||||||||
Common Name | BRADI_2g22505, LOC104582638 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 27834.2 Da PI: 6.3478 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 5.9e-18 | 40 | 89 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g WvAeIrdp + kr +lg+f ta +Aa a+++a+ +++g Bradi2g22505.1.p 40 KYRGVRQRR-WGTWVAEIRDP-----NasKRQWLGTFATAVDAAMAYDRAAVAIHG 89 8*****998.**********9.....445**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.6E-32 | 40 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-28 | 40 | 98 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.88E-26 | 40 | 97 | No hit | No description |
Pfam | PF00847 | 2.1E-10 | 40 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.929 | 40 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 40 | 97 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.3E-8 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-8 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEQAPAKTSS ASRKKRTKVK AFRTPAAHAG KGSLEKVHHK YRGVRQRRWG TWVAEIRDPN 60 ASKRQWLGTF ATAVDAAMAY DRAAVAIHGP SARLNLPSAS PTAAADGSVF GEHAVKPVAA 120 AASVFGEHGM KPVGAPASLF GEHGVKPMVA GTATSVFDEY EVKPMVTASV FDEHEVKPMS 180 AHGGSGDMGI TWHCGASWAA QEEVFADYLD YPDIAWYFNM DPSTEMLAYY PDRKSEDYQI 240 DGFDDDVLDS PLWALGD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-15 | 41 | 97 | 6 | 63 | ATERF1 |
3gcc_A | 2e-15 | 41 | 97 | 6 | 63 | ATERF1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g22505.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231269.2 | 0.0 | dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A0Q3G3D4 | 0.0 | A0A0Q3G3D4_BRADI; Uncharacterized protein | ||||
STRING | Traes_1BL_E0397871B.1 | 1e-49 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14102 | 22 | 26 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 1e-17 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g22505.1.p |
Entrez Gene | 104582638 |