PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g22440.1.p | ||||||||
Common Name | BRADI_2g22440, LOC100846086 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 510aa MW: 54724.1 Da PI: 6.4086 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100 | 1.4e-31 | 186 | 243 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK++kgse+prsYY+C+ +gCp+kkkve++ d++v+ei+Y+g+Hnh+k Bradi2g22440.1.p 186 DDGYNWRKYGQKQMKGSENPRSYYKCSAPGCPTKKKVEQAP-DGHVTEIVYKGTHNHPK 243 8****************************************.***************85 PP | |||||||
2 | WRKY | 106.7 | 1.1e-33 | 348 | 406 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+ Bradi2g22440.1.p 348 LDDGYRWRKYGQKVVKGNPNPRSYYKCTMAGCPVRKHVERASQDLRAVVTTYEGKHNHD 406 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-28 | 177 | 244 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.525 | 180 | 244 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-24 | 182 | 244 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.3E-34 | 185 | 243 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.6E-25 | 186 | 242 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.0E-37 | 333 | 408 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-29 | 340 | 408 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.895 | 343 | 408 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-38 | 348 | 407 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.9E-26 | 349 | 406 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
MAMTPPSSLP PPSPSSYFNM SAGFLDSPVL LTPSLFPSPT TGAFPSQPFN WMGTQENDNS 60 GLQGSVKQDD QQRYSGFTFQ TTAPMSGTTS TAPASFLQSS MPMAQLGGDS YNREQQQPQQ 120 QQQPWSYQSD TVSMDVTTTR PADFTTPFDF EAAPDNMLGN NVASGGYSTA PAGTGVRAQS 180 GRRSSDDGYN WRKYGQKQMK GSENPRSYYK CSAPGCPTKK KVEQAPDGHV TEIVYKGTHN 240 HPKPLQNARR GSSSGSGALS SYAMQGAGGA SMNNEVPAAD ALSGTPENSS ASYGDDDANV 300 NGGEEFEVDE PESKRWRGGG EGAMAICGNR TVREPRVVVQ TISDIDILDD GYRWRKYGQK 360 VVKGNPNPRS YYKCTMAGCP VRKHVERASQ DLRAVVTTYE GKHNHDVPAA RGSAAAARYR 420 AAMPMPMPMP QAASGYLQQG HSSLRPDGFG AAAPTTQQTD GSTSSFALSG FGNAPPSYFN 480 YGNDAMYYAA AKDEPRDDDR FFLGNSLMF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-36 | 174 | 409 | 6 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-36 | 174 | 409 | 6 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g22440.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF140554 | 1e-89 | AF140554.1 Avena sativa DNA-binding protein WRKY1 (wrky1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231268.1 | 0.0 | WRKY transcription factor WRKY24 | ||||
Swissprot | Q6B6R4 | 1e-132 | WRK24_ORYSI; WRKY transcription factor WRKY24 | ||||
TrEMBL | A0A0Q3MNQ9 | 0.0 | A0A0Q3MNQ9_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G22440.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2992 | 36 | 87 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 2e-88 | WRKY DNA-binding protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g22440.1.p |
Entrez Gene | 100846086 |
Publications ? help Back to Top | |||
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