PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g22227.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 703aa    MW: 80989.4 Da    PI: 8.1028
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g22227.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR126.52.1e-081041681090
              FAR1  10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       v F +r  k           ++ ++C+   k++        +++++++ r+gCk+ +++ +++d+ w++++++l H+H+l+
  Bradi2g22227.1.p 104 VRFGIRYGK-----------NKSYKCKSGPKKDGI-----PKKKNTSSVRCGCKCFIRLLRSEDHGWYIKECRLVHSHKLS 168
                       555555443...........234677655444444.....456999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-5113168IPR004330FAR1 DNA binding domain
PfamPF105511.1E-27291383IPR018289MULE transposase domain
PROSITE profilePS509669.384561597IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MEVGIGSSSA CSFASCDNLD GVQRNCRSDV PQCADEASVE EWSEVGAASV EASGLSASSR  60
SPLENALRGF AHRTTENILL PEIGLCFDSL PEAYEYFNLY SWEVRFGIRY GKNKSYKCKS  120
GPKKDGIPKK KNTSSVRCGC KCFIRLLRSE DHGWYIKECR LVHSHKLSRN SGEKMCWPSH  180
KHIDRYTREL VRNLRENNVP LTKVYNVLGT YFGSTEDIPF NKRSLENLCK QISREEANDD  240
VRKTMELFTK MRDEDPSFVY TADLDSDGRI RTLIWVNGKS KLDYIYFGDA ITFDTTYKTN  300
LYGMTFGLFV GVDNHFQSII FSGVLMRQET IESFEWIFRE FTSLMGGKAP ITILTDQCRA  360
MEVAIERVFT ETTHRWCKWH VLKMAKERLG SVYTKYSTFK AEFHKLINYS ITVPEFEAAW  420
EELLQKYDLK DHHFLTPIYE SRHRWAKPYF TAVFCAKMTS TQRSESANHM LKGYVPPGAP  480
MHLFVKQYNK LLADRISKED SENQRTRMHA ATIYTSVMLE MFSEHIFDSA GYNVIEVVPN  540
KKYLTVHFDA SRREKWSKVH YEVTISDDGG QYTCECGLAE HMGMLCCHSI RVMLQLGVDK  600
VPQAHILKRW TKDASDVLPD HLAHLQKDRG SARSQSYRHT SLHVAALELA NIGDKNIDCY  660
HDVLKYITDG TKKFGKCTSK QMDEVFKSLL PLQMYIRNQW IVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g22227.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317136.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2D9T60.0A0A2K2D9T6_BRADI; Uncharacterized protein (Fragment)
STRINGPavir.J04547.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-74FAR1-related sequence 5