PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g22010.1.p

Common Name

BRADI_2g22010

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 501aa MW: 52575.5 Da PI: 6.3241

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g22010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	269.7	9.6e-83	108	493	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 + lL+ecA a+s g+l+ a+ +L +ls++asp++ + +Rl+ayf++ALaarl++s+ ++++ l+ ++ + + + aa+++f++v P+ + Bradi2g22010.1.p 108 IALLMECAVAMSVGNLADANGALLELSQMASPYAaSCGERLVAYFARALAARLMSSWVGVCAPLSLQQHD-DAGIVIHAAFRAFYNVAPFARA 199 689****************************96778*******************999998886.778999999********* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 ++l++Nqa+l+a+ g+++vHi+D+d+ G lQW++Ll aLa+Rp+gpp lR+Tg+g s+ l+ g++La +A +lg+pfef +++ Bradi2g22010.1.p 200 AYLACNQAVLDAFRGQRAVHIVDLDMVPGgaLQWLSLLPALAARPGGPPaLLRVTGFGV----SAALLHDAGNQLAGLAGKLGLPFEFYAVAK 288 **********************988447*********8888789***....9**********************744 PP GRAS 184 k...rledleleeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...........sFlerflea 260 + + ++++ L +pgEa+aV++ h l+d ++ + ++l + l+P+v++vv+qe +++s+ sFl+rf++a Bradi2g22010.1.p 289 RpgdAAAAVSSGLLlpGKRPGEAVAVHWLR--HALYDAAGDEAA----AIRLARWLEPRVMTVVDQERSLSSSsssgaaaddggSFLDRFVSA 375 42212333344444445566****98..888765565555....***************8886666889999***** PP GRAS 261 leyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetl.ekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350 l++ysa fdsl a p+ + r+ E+ +lgrei nv+a +g +r r++ l ++W++ l + GF ++ ++ + a++l ++ + gy+ Bradi2g22010.1.p 376 LHHYSAAFDSLGAARPAGDdASRHLAENGMLGREIGNVLAIAGPSRSGRERLLpGSWQAELARHGFLRARWGSGG-ARAQMLAGACPaGLGYT 467 *******777677665999*********************99987479***********9876.5799***99 PP GRAS 351 veee..sgslvlgWkdrpLvsvSaWr 374 v ++ +g++ lgWk+ pL++vS W+ Bradi2g22010.1.p 468 VADDahDGTVRLGWKGTPLYAVSTWT 493 665488888**************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.88	81	471	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-80	108	493	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MINHLMSGRV VSDMHHHDSS LGLMQFHDPH QYMYSSSSST AGGSFLPHHH AAFIKDVAPA 60 EPLVEILEEA PGAAGAPAMQ EERKVVDEAA EEEEGEEAAA ESHGVRMIAL LMECAVAMSV 120 GNLADANGAL LELSQMASPY AASCGERLVA YFARALAARL MSSWVGVCAP LSLQQHDDAG 180 IVIHAAFRAF YNVAPFARAA YLACNQAVLD AFRGQRAVHI VDLDMVPGGA LQWLSLLPAL 240 AARPGGPPAL LRVTGFGVSA ALLHDAGNQL AGLAGKLGLP FEFYAVAKRP GDAAAAVSSG 300 LLLPGKRPGE AVAVHWLRHA LYDAAGDEAA AIRLARWLEP RVMTVVDQER SLSSSSSSGA 360 AADDGGSFLD RFVSALHHYS AAFDSLGAAR PAGDDASRHL AENGMLGREI GNVLAIAGPS 420 RSGRERLLPG SWQAELARHG FLRARWGSGG ARAQMLAGAC PAGLGYTVAD DAHDGTVRLG 480 WKGTPLYAVS TWTWCATTHG H

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MINHLMSGRV VSDMHHHDSS LGLMQFHDPH QYMYSSSSST AGGSFLPHHH AAFIKDVAPA  60
EPLVEILEEA PGAAGAPAMQ EERKVVDEAA EEEEGEEAAA ESHGVRMIAL LMECAVAMSV  120
GNLADANGAL LELSQMASPY AASCGERLVA YFARALAARL MSSWVGVCAP LSLQQHDDAG  180
IVIHAAFRAF YNVAPFARAA YLACNQAVLD AFRGQRAVHI VDLDMVPGGA LQWLSLLPAL  240
AARPGGPPAL LRVTGFGVSA ALLHDAGNQL AGLAGKLGLP FEFYAVAKRP GDAAAAVSSG  300
LLLPGKRPGE AVAVHWLRHA LYDAAGDEAA AIRLARWLEP RVMTVVDQER SLSSSSSSGA  360
AADDGGSFLD RFVSALHHYS AAFDSLGAAR PAGDDASRHL AENGMLGREI GNVLAIAGPS  420
RSGRERLLPG SWQAELARHG FLRARWGSGG ARAQMLAGAC PAGLGYTVAD DAHDGTVRLG  480
WKGTPLYAVS TWTWCATTHG H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-86	92	493	3	378	Protein SCARECROW
5b3h_D	3e-86	92	493	3	378	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g22010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566122.2	0.0	protein SCARECROW 2
TrEMBL	A0A2K2D9T1	0.0	A0A2K2D9T1_BRADI; Uncharacterized protein (Fragment)
STRING	BRADI2G22010.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13813	25	28
Representative plant	OGRP14268	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	4e-62	GRAS family protein

Link Out ? help Back to Top
Phytozome	Bradi2g22010.1.p