PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g21880.1.p | ||||||||
Common Name | BRADI_2g21880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 405aa MW: 45553 Da PI: 7.5581 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.2 | 8.9e-34 | 43 | 97 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFv+av+qLGG+ekAtPkt+++lm+++gLtl+h+kSHLQkYRl Bradi2g21880.1.p 43 KPRLKWTPELHQRFVDAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 97 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.387 | 40 | 100 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-32 | 41 | 98 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.42E-17 | 42 | 98 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.1E-23 | 43 | 98 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.5E-10 | 45 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 9.8E-23 | 142 | 188 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MYHQHQGPSE LFSTRTTFPM ERHLFLHGGS TQDSGLVLST DAKPRLKWTP ELHQRFVDAV 60 NQLGGAEKAT PKTVMRLMGI PGLTLYHLKS HLQKYRLSKN LQAQVNVGTT KNGCAVVADS 120 MPATSTPAMT NTNVIPQAEK TIQIGEALQM QIEVQRQLNE QLEVQRHLQL RIEAQGKYLQ 180 SVLEQAQESL GKQNLGPANL EDAKIKISEL VSQVSNECFS NAVTDIKESS RMHRLEPRQI 240 QFVESSTNNC LTAAEGYINE HRLHSHGVLK AYDDSSILYR KQSHGHEYQF PLNRSLSERR 300 MGHLHNVKEY HKAELGSESD TEIQQEYITP QKNVGGSTTS SASGTKEGDI KKLYLEEPSC 360 KRRAMDYPSF ERPNSGKKLD LNTHNTDDSD QGFRHFDLNG FSWS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-20 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-20 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-20 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-20 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-20 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-20 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-20 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-20 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g21880.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024315320.1 | 0.0 | myb-related protein 2-like | ||||
Refseq | XP_024315321.1 | 0.0 | myb-related protein 2-like | ||||
TrEMBL | A0A0Q3MNE8 | 0.0 | A0A0Q3MNE8_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G21880.2 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 2e-99 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g21880.1.p |