PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g21473.1.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 579aa MW: 65791.4 Da PI: 7.1

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g21473.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62	1.7e-19	262	382	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................................tekerrtraetrtg 61 Yn+YA ++GFs+r s+sk+s ++e+ k+ fvC+k +++ + +k +k+rr+++ + t+ Bradi2g21473.1.p 262 HYNAYALRLGFSTRSSTSKRSVYTNEVEKQLFVCNKFREPKVDGEKtqktkvapdvssesevdsedendqedalhvgkkPRKKRRRETMKGTN 354 6*********************************99999888778899***********************9878888899999* PP FAR1 62 CkaklkvkkekdgkwevtkleleHnHela 90 Cka+l vk++ d+ w+v + eHnH+l Bradi2g21473.1.p 355 CKARLIVKLM-DNIWQVVYFIAEHNHPLI 382 ********.9*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-18	262	382	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-22	505	577	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
MYLDGTSGCM CILGVPEMHT SKRKVPDELF LNGTRCPPDS PAPDLRATVA VIPGPCSLLS 60 RASDRGFRDP SRKQKGNTEK SKKKREKCRK SKKQSIPPRF DPDLLLLPWC LLPPMKFPHG 120 CCPKNKNQSR NLRLKNIFVK MDWLNLNELP TDLVDDTNDA VGEGCATTTL PSYCTQPALH 180 GEVSQAICTE GNVVASHNGS MQFASYEGQV GQIESTNFNQ DTTSMPDNDN NDVEIPEDEV 240 LSQPSEPYLG MRFDTLLCAK DHYNAYALRL GFSTRSSTSK RSVYTNEVEK QLFVCNKFRE 300 PKVDGEKTQK TKVAPDVSSE SEVDSEDEND QEDALHVGKK PRKKRRRETM KGTNCKARLI 360 VKLMDNIWQV VYFIAEHNHP LINKPSLTKY LRSHQGIPKK EENFLRILHD SNLETGHMMQ 420 LMSSFYGSGL LVPYTTKAIS NYRSRMRAQT RGGDMTETIS YFTQKRLDDP DFYFKVLLDD 480 EQRVQNFFWV DGAARTTYED AYSDCISFDT TYLTNQYNMP FAPFIGINRH GQSFMLGCGF 540 LRDEKATSFD WLFETYLDAM NDKAPKNIIT DQDWAMHA*

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

MYLDGTSGCM CILGVPEMHT SKRKVPDELF LNGTRCPPDS PAPDLRATVA VIPGPCSLLS  60
RASDRGFRDP SRKQKGNTEK SKKKREKCRK SKKQSIPPRF DPDLLLLPWC LLPPMKFPHG  120
CCPKNKNQSR NLRLKNIFVK MDWLNLNELP TDLVDDTNDA VGEGCATTTL PSYCTQPALH  180
GEVSQAICTE GNVVASHNGS MQFASYEGQV GQIESTNFNQ DTTSMPDNDN NDVEIPEDEV  240
LSQPSEPYLG MRFDTLLCAK DHYNAYALRL GFSTRSSTSK RSVYTNEVEK QLFVCNKFRE  300
PKVDGEKTQK TKVAPDVSSE SEVDSEDEND QEDALHVGKK PRKKRRRETM KGTNCKARLI  360
VKLMDNIWQV VYFIAEHNHP LINKPSLTKY LRSHQGIPKK EENFLRILHD SNLETGHMMQ  420
LMSSFYGSGL LVPYTTKAIS NYRSRMRAQT RGGDMTETIS YFTQKRLDDP DFYFKVLLDD  480
EQRVQNFFWV DGAARTTYED AYSDCISFDT TYLTNQYNMP FAPFIGINRH GQSFMLGCGF  540
LRDEKATSFD WLFETYLDAM NDKAPKNIIT DQDWAMHA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	338	346	KKPRKKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g21473.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233530.1	1e-148	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K2D9R2	0.0	A0A2K2D9R2_BRADI; Uncharacterized protein
STRING	BRADI1G10750.1	1e-143	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7287	5	18
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-46	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi2g21473.1.p