PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi2g21290.1.p | ||||||||
Common Name | BRADI_2g21290, LOC100835219 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 279aa MW: 30863.5 Da PI: 5.1688 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 60.3 | 3.9e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P rikki++adedv +i+ +Pvl+ska elf+ +l r+++ + ++ +t+ s +++++ + d++dfl ++v + Bradi2g21290.1.p 6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYNITVQKGVKTVSSSHLKQCIHSYDVYDFLKNVVNK 86 5789************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.5E-25 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.41E-20 | 4 | 88 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.4E-18 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence Send to blast |
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YNITVQKGVK 60 TVSSSHLKQC IHSYDVYDFL KNVVNKVPDL GAPDTSADDK LGKRRKHAED ESEEESKRTR 120 NEVASHASNG RGRGRGRGRG RRGGRGAERE TEYHELAPCE SKPVNLKVEI GDVGSDTIET 180 KEPTPLSNAR ASLRNIDLNL DLDEYEDTVA QFQPEAPVAS VAAPSAGPSV SQSIEDVKTK 240 DFLGWQLPEM SKMGMDPVQF ALSSDHRLEV DEDYDNEE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 4e-22 | 2 | 71 | 5 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 130 | 139 | RGRGRGRGRG |
2 | 130 | 140 | RGRGRGRGRGR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi2g21290.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568199.1 | 0.0 | dr1-associated corepressor | ||||
TrEMBL | I1HI49 | 0.0 | I1HI49_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G21290.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2172 | 36 | 79 | Representative plant | OGRP2179 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12480.1 | 1e-51 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi2g21290.1.p |
Entrez Gene | 100835219 |