PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g21270.1.p
Common NameBRADI_2g21270
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 632aa    MW: 73961.4 Da    PI: 9.0098
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g21270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.12.8e-1839129290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        Yn+YAk   Fsvr + +++ + + e ++r+f+Cskeg+r e+    ++k+r++r+ tr+gCka+l++++e  +g    ++++  H+H+l 
  Bradi2g21270.1.p  39 HYNSYAKPKRFSVRLDDKEYISGTMELKRRRFCCSKEGYRLEKYFVaKDKKREPRVLTRCGCKAMLEIQREPgTGLCFFKNFVDVHSHPLD 129
                       6*******************99******************9987655789999*******************99***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-1539130IPR004330FAR1 DNA binding domain
PfamPF105516.6E-34251344IPR018289MULE transposase domain
PROSITE profilePS509668.716531570IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MSGLSVSEMD GYNASMEEME EYHMMVSQMF GSVEEGYEHY NSYAKPKRFS VRLDDKEYIS  60
GTMELKRRRF CCSKEGYRLE KYFVAKDKKR EPRVLTRCGC KAMLEIQREP GTGLCFFKNF  120
VDVHSHPLDP KQSPFLRSHR RLNNAQKADA VEYGLGGLRT CQIMEVMEKH HGRYDQVGFF  180
SRDLYNFFAK YKKKRLLGRD AEFVLNHMRA QVERDAEFFF KYSTDDEGHL RNIFWADSQS  240
QIDYEAFGDL VVFDSTYRVN RYNLPFVPFI GVNHHRSTIV FGVGIVSDET VSSHEWLLQS  300
FLEAMSHKNP RSVITDGDAA TRKAIKKVMP RTDHRLCSWH IEQNMIRHLR NPMLRDFRKL  360
IYRKMGVYEF ERSWAQFKEK YEITEQAAWM SRMYKLRKRW SAAYTNGRYF LGMQSNQRSE  420
SLNSRLHNHL DRKMSLVDLV EHSEHCMSCI RRNEAELDAK AANSVPFTRI DANPLEKNAA  480
CIYTPKMFRK VRYCIRRSSA WEIEEHTERD GLVTYRAALK EGAEGGSRHV FFVECSFHGS  540
SMNGIFCGCR KLECEAVPCS HIFSVLSFLG VETIPPCCVR IRWTMQAKAA FVSETNANTH  600
VWSEEMGHYR QMRNKASVAL FKASKSEERL QQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g21270.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233182.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K2D9Q20.0A0A2K2D9Q2_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI2G21270.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-92FAR1-related sequence 5