PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g21264.1.p
Common NameBRADI_2g21264
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 321aa    MW: 34928.5 Da    PI: 7.9727
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g21264.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.6e-1498194194
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       f kv t+ d++k + + +p ++a+ +     +g    ++ l + d++g++W+++++y    +++++++lt+GW+ F k + L +gD++ F++ 
  Bradi2g21264.1.p  98 FPKVVTNGDAGKGRSFHVPIPCATGIfpaldDGR--DDQYLYFSDLRGQVWRFRHKYtgfPGGRRKHLLTSGWNAFRKTKSLVAGDVLPFMR- 187
                       66899999***************999**986433..5568*****************887777777*************************4. PP

                       SSSEE..EE CS
                B3  86 grsefelvv 94 
                         s+ +l++
  Bradi2g21264.1.p 188 --SRDRLLI 194
                       ..4444555 PP
2Auxin_resp28.37.5e-11214289168
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkma........fetedsserrl.sGtvvgvsd 68 
                       aa+ a+ +++F+v++ Pr   +eF v++e+v + l+ ++ +GmR+ ++        ++t  ss+ ++ +Gtv++v++
  Bradi2g21264.1.p 214 AARLAADGNAFTVTWFPRL-GPEFLVPREEVDAGLQAHWVPGMRVSIRtavlrpgiLDTAPSSRVSVvYGTVTAVHE 289
                       6788999***********8.68***********************99833333433577778888878999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-2293194IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1795192IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-1198194IPR003340B3 DNA binding domain
PROSITE profilePS5086311.27998200IPR003340B3 DNA binding domain
SMARTSM010190.001298200IPR003340B3 DNA binding domain
CDDcd100173.38E-10100190No hitNo description
PfamPF065079.9E-7214289IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAQPLPAGHP AALDRRLWLA CASPLSRLPE VGSEVYYLPL GHAEQCHGAP RSKDSSPTSS  60
SAPRDEVCAT ITLHPGADPQ ANQAPAALQH NADCIHVFPK VVTNGDAGKG RSFHVPIPCA  120
TGIFPALDDG RDDQYLYFSD LRGQVWRFRH KYTGFPGGRR KHLLTSGWNA FRKTKSLVAG  180
DVLPFMRSRD RLLIALQRTQ NPAPLVSLED VMDAARLAAD GNAFTVTWFP RLGPEFLVPR  240
EEVDAGLQAH WVPGMRVSIR TAVLRPGILD TAPSSRVSVV YGTVTAVHER AWKKLEVDWT  300
NSTDDHQPSS DDSSSTGVSM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-291230818344Auxin response factor 1
4ldy_B1e-291230818344Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g21264.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314537.11e-179auxin response factor 13-like
TrEMBLA0A0Q3G5A20.0A0A0Q3G5A2_BRADI; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5004122
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.12e-37auxin response factor 16