PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g21067.1.p
Common NameBRADI_2g21067, LOC100846903
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 196aa    MW: 20594.2 Da    PI: 10.693
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g21067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-183988255
               AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       y+GVr ++ +gr++AeIrd ++    ++r++lg+++t+ +Aa a+++a+ +l+g
  Bradi2g21067.1.p 39 PYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTYDTPVDAALAYDRAAVALRG 88
                      59*******.**********883....5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.2463996IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-303996IPR001471AP2/ERF domain
SMARTSM003801.4E-3339102IPR001471AP2/ERF domain
CDDcd000182.52E-294095No hitNo description
PRINTSPR003672.0E-94051IPR001471AP2/ERF domain
PfamPF008472.2E-114088IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-214096IPR016177DNA-binding domain
PRINTSPR003672.0E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MQEMMRGGDQ RSRCGGAGGG RGGVVASGGG GAGAEGGRPY RGVRKRPWGR YAAEIRDPWK  60
KTRVWLGTYD TPVDAALAYD RAAVALRGSK ARTNFGSGSG TGLGLLHQQQ QPPRPVAHVP  120
AATTFGGLDV THPSPWHFVY FPSRLQDFLT QAPGPVVARE LVAPSLPSTV LELRTGPSAT  180
PTFDLNEPPS MLFGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-213795362ATERF1
3gcc_A8e-213795362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g21067.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085233e-73AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence.
GenBankAK2423933e-73AK242393.1 Oryza sativa Japonica Group cDNA, clone: J080064G22, full insert sequence.
GenBankAP0149613e-73AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126133e-73CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8288803e-73CT828880.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038E23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566084.11e-138ethylene-responsive transcription factor 12
TrEMBLI1HI201e-137I1HI20_BRADI; Uncharacterized protein
STRINGBRADI2G21067.11e-138(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-18ERF domain protein 12