PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g21060.1.p | ||||||||
Common Name | BRADI_2g21060, LOC100830728 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 23849.8 Da PI: 9.0153 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.3 | 2.9e-21 | 34 | 85 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrdp k+ r++lg+++taeeAa+a++aa+++++g+ Bradi2g21060.1.p 34 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREYRGN 85 68********.**********83...36**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.01E-18 | 34 | 92 | No hit | No description |
Pfam | PF00847 | 7.3E-15 | 34 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.263 | 35 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-36 | 35 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-23 | 35 | 93 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-32 | 35 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAPRTSDKTA TPAAAAAGTG LALGVGGGGA AVGPHYRGVR KRPWGRYAAE IRDPAKKSRV 60 WLGTYDTAEE AARAYDAAAR EYRGNKAKTN FPFPSAAVTG GGGSSNSSTV ESLGGDVQDQ 120 APMQAIPLPP PSLELDLFHR AAAAAAGPGG MRGFPFTSYP LSHPYYFFGQ AAAAAAAAGC 180 HALKLSPPVT VVATVSPSDS GSSSVVDLAP SPPAVSAKKA VVVFDLDLNC PPPAES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-22 | 31 | 93 | 1 | 64 | ATERF1 |
3gcc_A | 3e-22 | 31 | 93 | 1 | 64 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g21060.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568185.1 | 1e-167 | ethylene-responsive transcription factor 8 | ||||
TrEMBL | I1HI19 | 1e-166 | I1HI19_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G21060.1 | 1e-166 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3846 | 31 | 74 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 6e-18 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g21060.1.p |
Entrez Gene | 100830728 |