PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g20760.1.p
Common NameBRADI_2g20760, LOC100842640
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 421aa    MW: 44312.2 Da    PI: 6.5799
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g20760.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS253.67.5e-78384172373
              GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlar..svselykalppsetseknsseelaalkl..fsevs 88 
                       ++lLl+cA a++s+d +laq++++ l+++  s++g +p+ Rl++ ++++L ar  r   +++ ++  ++ + +++   + ++a++l  +++++
  Bradi2g20760.1.p  38 QQLLLHCAAALESKDVTLAQQAMWVLNNIvGSSQGdTPNSRLTSALLRGLVARACRtcVSPGSSAEAAAGPGRSRAGGNGISATELaeYVDLT 130
                       699**************************85666659*******************42233444444555556666899999999999***** PP

              GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfe 177
                       P+++f++ + N aIl+a++g  ++H++D+++++++QWp+L++aL++R++gpp lRi +  +  ++     +     +g rLa+fA++ gv+++
  Bradi2g20760.1.p 131 PWHRFGFTASNGAILRAAAGRPALHVVDLSVTHCMQWPTLIDALSKRAGGPPALRISVPRARPAVppllAASDAALLGPRLANFAKSRGVRLD 223
                       *********************************************************98886666999999999******************* PP

              GRAS 178 fnvlvakrledl....eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                       f+v+ +k+ e      + e+L+++ gEal+Vn++  l ++       + +rd +L++v+ l+P +v+v++++ad++s+s++ r++ +le+++ 
  Bradi2g20760.1.p 224 FHVIDVKNAELAsvlsDREALELRDGEALVVNCHSWLRHVA------PGRRDGLLDAVRALEPCLVTVTDEDADLDSPSLASRIAGCLEFHWI 310
                       ***9666555443366899******************9998......677899**************************************** PP

              GRAS 267 lfdsleaklpreseerikvErellgreivnvvace..gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                       lfd+l++ +pr+s  r+  E++ l+++i++vva    g +  er e  ++ +er+++ GF  v ++e++a+++++ll +++ +g+ v+ e++ 
  Bradi2g20760.1.p 311 LFDALDTCAPRDSTRRAEQEAA-LAQKIESVVAGDdgGGAAAERSECGARLSERMRRRGFDGVGFGEEVAAEVRRLLGEHA-NGWGVKTEEDM 401
                       *************999999999.9********9752255689***************************************.99********* PP

              GRAS 358 lvlgWkdrpLvsvSaW 373
                       +vl+Wk++  v+++aW
  Bradi2g20760.1.p 402 MVLTWKGHGAVFTTAW 417
                       **************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.2211399IPR005202Transcription factor GRAS
PfamPF035142.6E-7538417IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEQELRSGGP ALPRPHSGSG GSICFSGAAA LVDGPRIQQL LLHCAAALES KDVTLAQQAM  60
WVLNNIVGSS QGDTPNSRLT SALLRGLVAR ACRTCVSPGS SAEAAAGPGR SRAGGNGISA  120
TELAEYVDLT PWHRFGFTAS NGAILRAAAG RPALHVVDLS VTHCMQWPTL IDALSKRAGG  180
PPALRISVPR ARPAVPPLLA ASDAALLGPR LANFAKSRGV RLDFHVIDVK NAELASVLSD  240
REALELRDGE ALVVNCHSWL RHVAPGRRDG LLDAVRALEP CLVTVTDEDA DLDSPSLASR  300
IAGCLEFHWI LFDALDTCAP RDSTRRAEQE AALAQKIESV VAGDDGGGAA AERSECGARL  360
SERMRRRGFD GVGFGEEVAA EVRRLLGEHA NGWGVKTEED MMVLTWKGHG AVFTTAWAPS  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-452242077475Protein SHORT-ROOT
5b3h_B3e-452242023421Protein SHORT-ROOT
5b3h_E3e-452242023421Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g20760.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1133324e-43AC113332.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1057_B02, complete sequence.
GenBankAC1305974e-43AC130597.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017K09, complete sequence.
GenBankAK0704894e-43AK070489.1 Oryza sativa Japonica Group cDNA clone:J023050L12, full insert sequence.
GenBankAP0149614e-43AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126134e-43CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566073.10.0scarecrow-like protein 32
TrEMBLI1HHY40.0I1HHY4_BRADI; Uncharacterized protein
STRINGBRADI2G20760.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122273238
Representative plantOGRP24991534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.13e-87GRAS family protein