PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g20720.2.p
Common NameBRADI_2g20720, LOC100841119
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 319aa    MW: 33403.2 Da    PI: 7.5401
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g20720.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000162062431254
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +A+ YIk L
  Bradi2g20720.2.p 206 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIGYIKFL 243
                       677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.357194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-10204254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-8204252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.92E-5204248No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAEEWWSGAR TGGGAPACSR TAPAPATESP TSRNSVASSQ PAGFPVDHTA ASFALADPDM  60
DWTRAFMDGK AAESEQHPTS FNALLGLQGD ASRQFLLDQA ALLQQPGVSS LQYADSRPSM  120
TPFCSQQQQL PGGGFFISSS SGIFGSSPGP PPEHIKSNTG PAAVQVHQDA CSSSATKRNG  180
AGAGSPVASK KPRIDTPSPL PTFKVRKEKL GDRITALQQL VSPFGKTDTA SVLHEAIGYI  240
KFLHDQVASL SSPYLSSCGR ALQDQHQLQG SIKVDGKAKE DLRSRGLCLV PVASTYTVAN  300
EAAPEFWNPT FGVGGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g20720.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378347e-81CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566069.10.0transcription factor bHLH123
TrEMBLA0A0Q3QWB20.0A0A0Q3QWB2_BRADI; Uncharacterized protein
STRINGBRADI2G20720.11e-177(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-48bHLH family protein