PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g19610.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HB-PHD | ||||||||
Protein Properties | Length: 1002aa MW: 109866 Da PI: 4.6241 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 39 | 1.4e-12 | 811 | 863 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 R++f + ++L e+F+ ++yp+++ +e LA++lgLt +qV+ WF rR+k + Bradi2g19610.6.p 811 RRQFGPIIYQRLHEHFKTDQYPKRAVKESLANELGLTFQQVSKWFETRRYKTR 863 7778888889*****************************************87 PP | |||||||
2 | PHD | 39.9 | 9.9e-14 | 253 | 308 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C++ + +++++lCdg C++ fH+kCl+++l ++++p g wlC+ C++k Bradi2g19610.6.p 253 ICATCSSqyVTLNNDIILCDGvCDRGFHQKCLNPPLLTKDIPAGdeGWLCPACDCK 308 6******87667********77********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.4E-12 | 247 | 311 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 5.8E-12 | 250 | 307 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.923 | 251 | 308 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 2.0E-10 | 253 | 306 | IPR001965 | Zinc finger, PHD-type |
Pfam | PF00628 | 1.2E-10 | 253 | 308 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 1.07E-23 | 254 | 305 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 254 | 305 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50071 | 14.107 | 805 | 865 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-10 | 807 | 869 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.61E-11 | 810 | 863 | No hit | No description |
SuperFamily | SSF46689 | 8.55E-12 | 810 | 870 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-12 | 811 | 870 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.8E-10 | 811 | 863 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 840 | 863 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1002 aa Download sequence Send to blast |
MDMNKGTGSG CAEDNVETGN YANSSQNPET LDNQSLPYTS QSLENNTGQR KNYKRTANRG 60 RKGYRVLADR NYPLRSSDCD TTVRVLRSRS AANKPPSDSA HTLVHSAANK FPSDSVHTLV 120 QPAAKRIKRG RPTKKGPNNE FSKIRQRVRY ILNRMNYEQS LLEAYANEGW KRQSCDFLVV 180 LSCDVKMLVT NTQTYSLEKI RPEKELERAK EEIVRCKLRI REAFQNLDSL LSMGKLDESL 240 FDNEGKISCE DIICATCSSQ YVTLNNDIIL CDGVCDRGFH QKCLNPPLLT KDIPAGDEGW 300 LCPACDCKID CIDVINELQG TNLSISDSWE KVFPETAALA HGTIPKDAFD LPSEDSEDSD 360 FDPNIAEEHV TGHEEGSSEE DEDEGSDSDD SNFVTTCDNS EHLKEKEKVD DLGLPSEDSE 420 DDDYDPAGPD SDKDIKEKQD ESDFTSDSDD FCAEIAKSCG RDEVSSGAKV GDPTNDLEGA 480 TACSNTAIPN LTSNDLEIDQ DEVLPVLGRR QGQRLDYKKL YDDAYGEAPS DSSDGEEWSG 540 KSTSEKGDEE RNEVDSFLRK SSRGTGTVQQ SNDFLPQSAR QSLDPDGLVN GQHPGKLTSD 600 VSNNKTNRKP LNNKEEVDDL GLPSEDSEDD DYDPAGPDSD KDIEKKQSSS NESDYSSASD 660 DFCGEIAKSC GREGVPSGAK AGGHPTNDLE GTTVRTNAAI SNLPSKDSQM DQDVVSPVSG 720 RRQDQSLDCK KLYDEACREA SSDSSDGEDW SGKCTPEKDS EKQSDTCRRT GAVRQSNGST 780 PDNARQSLHR TNGQHTEELL TSDGSSSTVH RRQFGPIIYQ RLHEHFKTDQ YPKRAVKESL 840 ANELGLTFQQ VSKWFETRRY KTRIAAKKND SCVKNHSIKE NQSSVAAHIE ATDPKDLGKK 900 LNVCKNGAAN DVMASGILNG GIKQDSPLKQ DTSGGLGTHV SPPGSSPKGD PIENHGNNTS 960 SRCVGKPKDG YTGNVVLALP VVDDRTKEAA MRELKKRKTG S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts with the shrunken (SHR) 26 bp feedback control element. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g19610.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231157.1 | 0.0 | homeobox protein HOX1A isoform X1 | ||||
Refseq | XP_014754573.1 | 0.0 | homeobox protein HOX1A isoform X1 | ||||
Swissprot | P46605 | 1e-180 | HOX1A_MAIZE; Homeobox protein HOX1A | ||||
TrEMBL | I1HHJ2 | 0.0 | I1HHJ2_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G19610.2 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4393 | 37 | 68 | Representative plant | OGRP1830 | 15 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 3e-73 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g19610.6.p |
Publications ? help Back to Top | |||
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