PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g19610.5.p | ||||||||
Common Name | BRADI_2g19610, LOC100827663 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HB-PHD | ||||||||
Protein Properties | Length: 927aa MW: 101588 Da PI: 4.6919 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 39.1 | 1.3e-12 | 736 | 788 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 R++f + ++L e+F+ ++yp+++ +e LA++lgLt +qV+ WF rR+k + Bradi2g19610.5.p 736 RRQFGPIIYQRLHEHFKTDQYPKRAVKESLANELGLTFQQVSKWFETRRYKTR 788 7778888889*****************************************87 PP | |||||||
2 | PHD | 40 | 9e-14 | 231 | 286 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C++ + +++++lCdg C++ fH+kCl+++l ++++p g wlC+ C++k Bradi2g19610.5.p 231 ICATCSSqyVTLNNDIILCDGvCDRGFHQKCLNPPLLTKDIPAGdeGWLCPACDCK 286 6******87667********77********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.26E-12 | 225 | 289 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 5.3E-12 | 228 | 285 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.923 | 229 | 286 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 2.0E-10 | 231 | 284 | IPR001965 | Zinc finger, PHD-type |
Pfam | PF00628 | 1.1E-10 | 231 | 286 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 232 | 283 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd15504 | 6.95E-24 | 232 | 283 | No hit | No description |
PROSITE profile | PS50071 | 14.107 | 730 | 790 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-10 | 732 | 794 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-12 | 735 | 795 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.01E-11 | 735 | 788 | No hit | No description |
Pfam | PF00046 | 4.4E-10 | 736 | 788 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-12 | 736 | 795 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 765 | 788 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 927 aa Download sequence Send to blast |
MDMNKGTGSG CAEDNVETGN YANSSQNPET LDNQSLPYTS QSLENNTGQR KNYKRTANRG 60 RKGYRVLADR NYPLRSSDCD TTVRVLRSRS AANKPPSDSA HTLVHSAANK FPSDSVHTLV 120 QPAAKRIKRG RPTKKGPNNE FSKIRQRVRY ILNRMNYEQS LLEAYANEGW KRQSLEKIRP 180 EKELERAKEE IVRCKLRIRE AFQNLDSLLS MGKLDESLFD NEGKISCEDI ICATCSSQYV 240 TLNNDIILCD GVCDRGFHQK CLNPPLLTKD IPAGDEGWLC PACDCKIDCI DVINELQGTN 300 LSISDSWEKV FPETAALAHG TIPKDAFDLP SEDSEDSDFD PNIAEEHVTG HEEGSSEEDE 360 DEGSDSDDSN FVTTCDNSEH LKEKEKVDDL GLPSEDSEDD DYDPAGPDSD KDIKEKQDES 420 DFTSDSDDFC AEIAKSCGRD EVSSGAKDAY GEAPSDSSDG EEWSGKSTSE KGDEERNEVD 480 SFLRKSSRGT GTVQQSNDFL PQSARQSLDP DGLVNGQHPG KLTSDVSNNK TNRKPLNNKE 540 EVDDLGLPSE DSEDDDYDPA GPDSDKDIEK KQSSSNESDY SSASDDFCGE IAKSCGREGV 600 PSGAKAGGHP TNDLEGTTVR TNAAISNLPS KDSQMDQDVV SPVSGRRQDQ SLDCKKLYDE 660 ACREASSDSS DGEDWSGKCT PEKDSEKQSD TCRRTGAVRQ SNGSTPDNAR QSLHRTNGQH 720 TEELLTSDGS SSTVHRRQFG PIIYQRLHEH FKTDQYPKRA VKESLANELG LTFQQVSKWF 780 ETRRYKTRIA AKKNDSCVKN HSIKENQSSV AAHIEATDPK DLGKKLNVCK NGAANDVMAS 840 GILNGGIKQD SPLKQDTSGG LGTHVSPPGS SPKGDPIENH GNNTSSRCVG KPKDGYTGNV 900 VLALPVVDDR TKEAAMRELK KRKTGS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts with the shrunken (SHR) 26 bp feedback control element. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g19610.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014754574.1 | 0.0 | homeobox protein HOX1A isoform X2 | ||||
Swissprot | P46605 | 1e-159 | HOX1A_MAIZE; Homeobox protein HOX1A | ||||
TrEMBL | A0A0Q3IHL0 | 0.0 | A0A0Q3IHL0_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G19610.2 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 2e-78 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g19610.5.p |
Entrez Gene | 100827663 |
Publications ? help Back to Top | |||
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