PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g19610.20.p
Common NameBRADI_2g19610, LOC100827663
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HB-PHD
Protein Properties Length: 891aa    MW: 97853.5 Da    PI: 4.716
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g19610.20.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.21.2e-12700752456
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        R++f +   ++L e+F+ ++yp+++ +e LA++lgLt +qV+ WF  rR+k +
  Bradi2g19610.20.p 700 RRQFGPIIYQRLHEHFKTDQYPKRAVKESLANELGLTFQQVSKWFETRRYKTR 752
                        7778888889*****************************************87 PP
2PHD40.18.6e-14231286151
                        SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                        +C+ C++   + +++++lCdg C++ fH+kCl+++l ++++p g   wlC+ C++k
  Bradi2g19610.20.p 231 ICATCSSqyVTLNNDIILCDGvCDRGFHQKCLNPPLLTKDIPAGdeGWLCPACDCK 286
                        6******87667********77********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.2E-12225289IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.0E-12228285IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.923229286IPR019787Zinc finger, PHD-finger
SMARTSM002492.0E-10231284IPR001965Zinc finger, PHD-type
PfamPF006281.1E-10231286IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590232283IPR019786Zinc finger, PHD-type, conserved site
CDDcd155048.54E-24232283No hitNo description
PROSITE profilePS5007114.107694754IPR001356Homeobox domain
SMARTSM003894.3E-10696758IPR001356Homeobox domain
SuperFamilySSF466897.27E-12699759IPR009057Homeodomain-like
CDDcd000863.87E-11699752No hitNo description
Gene3DG3DSA:1.10.10.604.3E-12700759IPR009057Homeodomain-like
PfamPF000464.2E-10700752IPR001356Homeobox domain
PROSITE patternPS000270729752IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
MDMNKGTGSG CAEDNVETGN YANSSQNPET LDNQSLPYTS QSLENNTGQR KNYKRTANRG  60
RKGYRVLADR NYPLRSSDCD TTVRVLRSRS AANKPPSDSA HTLVHSAANK FPSDSVHTLV  120
QPAAKRIKRG RPTKKGPNNE FSKIRQRVRY ILNRMNYEQS LLEAYANEGW KRQSLEKIRP  180
EKELERAKEE IVRCKLRIRE AFQNLDSLLS MGKLDESLFD NEGKISCEDI ICATCSSQYV  240
TLNNDIILCD GVCDRGFHQK CLNPPLLTKD IPAGDEGWLC PACDCKIDCI DVINELQGTN  300
LSISDSWEKV FPETAALAHG TIPKDAFDLP SEDSEDSDFD PNIAEEHVTG HEEGSSEEDE  360
DEGSDSDDSN FVTTCDNSEH LKEKEKVDDL GLPSEDSEDD DYDPAGPDSD KDIKEKQDES  420
DFTSDSDDFC AEIAKSCGRD EVSSGAKDAY GEAPSDSSDG EEWSGKSTSE KGDEERNEVD  480
SFLRKSSRGT GTVQQSNDFL PQSARQSLDP DGLVNGQHPG KLTSDVSNNK TNRKPLNNKE  540
EVDDLGLPSE DSEDDDYDPA GPDSDKDIEK KQSSSNESDY SSASDDFCGE IAKSCGREGV  600
PSGAKAVSGR RQDQSLDCKK LYDEACREAS SDSSDGEDWS GKCTPEKDSE KQSDTCRRTG  660
AVRQSNGSTP DNARQSLHRT NGQHTEELLT SDGSSSTVHR RQFGPIIYQR LHEHFKTDQY  720
PKRAVKESLA NELGLTFQQV SKWFETRRYK TRIAAKKNDS CVKNHSIKEN QSSVAAHIEA  780
TDPKDLGKKL NVCKNGAAND VMASGILNGG IKQDSPLKQD TSGGLGTHVS PPGSSPKGDP  840
IENHGNNTSS RCVGKPKDGY TGNVVLALPV VDDRTKEAAM RELKKRKTGS *
Functional Description ? help Back to Top
Source Description
UniProtInteracts with the shrunken (SHR) 26 bp feedback control element.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g19610.20.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754574.10.0homeobox protein HOX1A isoform X2
SwissprotP466051e-160HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBLA0A2K2D9G20.0A0A2K2D9G2_BRADI; Uncharacterized protein
STRINGBRADI2G19610.20.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-78Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Bellmann R,Werr W
    Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element.
    EMBO J., 1992. 11(9): p. 3367-74
    [PMID:1354614]