PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g19610.19.p | ||||||||
Common Name | BRADI_2g19610, LOC100827663 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HB-PHD | ||||||||
Protein Properties | Length: 922aa MW: 101018 Da PI: 4.6881 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 39.1 | 1.3e-12 | 731 | 783 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 R++f + ++L e+F+ ++yp+++ +e LA++lgLt +qV+ WF rR+k + Bradi2g19610.19.p 731 RRQFGPIIYQRLHEHFKTDQYPKRAVKESLANELGLTFQQVSKWFETRRYKTR 783 7778888889*****************************************87 PP | |||||||
2 | PHD | 40 | 9e-14 | 226 | 281 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C++ + +++++lCdg C++ fH+kCl+++l ++++p g wlC+ C++k Bradi2g19610.19.p 226 ICATCSSqyVTLNNDIILCDGvCDRGFHQKCLNPPLLTKDIPAGdeGWLCPACDCK 281 6******87667********77********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.24E-12 | 220 | 284 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 5.2E-12 | 223 | 280 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.923 | 224 | 281 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 2.0E-10 | 226 | 279 | IPR001965 | Zinc finger, PHD-type |
Pfam | PF00628 | 1.1E-10 | 226 | 281 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 7.15E-24 | 227 | 278 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 227 | 278 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50071 | 14.107 | 725 | 785 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-10 | 727 | 789 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.02E-11 | 730 | 783 | No hit | No description |
SuperFamily | SSF46689 | 7.7E-12 | 730 | 790 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-12 | 731 | 790 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.4E-10 | 731 | 783 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 760 | 783 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 922 aa Download sequence Send to blast |
MDMNKGTGSG CAEDNVETGN YANSSQNPET LDNQSLPYTS QSLENNTGQR KNYKRTANRG 60 RKGYRVLADR NYPLRSSDCD TTVRVLRSRS AANKPPSDSA HTLVHSAANK FPSDSVHTLV 120 QPAAKRIKRG RPTKKGPNNE FSKIRQRVRY ILNRMNYEQS LLEAYANEGW KRQRPEKELE 180 RAKEEIVRCK LRIREAFQNL DSLLSMGKLD ESLFDNEGKI SCEDIICATC SSQYVTLNND 240 IILCDGVCDR GFHQKCLNPP LLTKDIPAGD EGWLCPACDC KIDCIDVINE LQGTNLSISD 300 SWEKVFPETA ALAHGTIPKD AFDLPSEDSE DSDFDPNIAE EHVTGHEEGS SEEDEDEGSD 360 SDDSNFVTTC DNSEHLKEKE KVDDLGLPSE DSEDDDYDPA GPDSDKDIKE KQDESDFTSD 420 SDDFCAEIAK SCGRDEVSSG AKDAYGEAPS DSSDGEEWSG KSTSEKGDEE RNEVDSFLRK 480 SSRGTGTVQQ SNDFLPQSAR QSLDPDGLVN GQHPGKLTSD VSNNKTNRKP LNNKEEVDDL 540 GLPSEDSEDD DYDPAGPDSD KDIEKKQSSS NESDYSSASD DFCGEIAKSC GREGVPSGAK 600 AGGHPTNDLE GTTVRTNAAI SNLPSKDSQM DQDVVSPVSG RRQDQSLDCK KLYDEACREA 660 SSDSSDGEDW SGKCTPEKDS EKQSDTCRRT GAVRQSNGST PDNARQSLHR TNGQHTEELL 720 TSDGSSSTVH RRQFGPIIYQ RLHEHFKTDQ YPKRAVKESL ANELGLTFQQ VSKWFETRRY 780 KTRIAAKKND SCVKNHSIKE NQSSVAAHIE ATDPKDLGKK LNVCKNGAAN DVMASGILNG 840 GIKQDSPLKQ DTSGGLGTHV SPPGSSPKGD PIENHGNNTS SRCVGKPKDG YTGNVVLALP 900 VVDDRTKEAA MRELKKRKTG S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts with the shrunken (SHR) 26 bp feedback control element. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g19610.19.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014754574.1 | 0.0 | homeobox protein HOX1A isoform X2 | ||||
Swissprot | P46605 | 1e-154 | HOX1A_MAIZE; Homeobox protein HOX1A | ||||
TrEMBL | A0A2K2D9F2 | 0.0 | A0A2K2D9F2_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G19610.2 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 3e-73 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g19610.19.p |
Entrez Gene | 100827663 |
Publications ? help Back to Top | |||
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