PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g19610.14.p | ||||||||
Common Name | BRADI_2g19610, LOC100827663 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HB-PHD | ||||||||
Protein Properties | Length: 944aa MW: 103669 Da PI: 4.6544 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 39.1 | 1.3e-12 | 753 | 805 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 R++f + ++L e+F+ ++yp+++ +e LA++lgLt +qV+ WF rR+k + Bradi2g19610.14.p 753 RRQFGPIIYQRLHEHFKTDQYPKRAVKESLANELGLTFQQVSKWFETRRYKTR 805 7778888889*****************************************87 PP | |||||||
2 | PHD | 40 | 9.2e-14 | 231 | 286 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C++ + +++++lCdg C++ fH+kCl+++l ++++p g wlC+ C++k Bradi2g19610.14.p 231 ICATCSSqyVTLNNDIILCDGvCDRGFHQKCLNPPLLTKDIPAGdeGWLCPACDCK 286 6******87667********77********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.28E-12 | 225 | 289 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 5.4E-12 | 228 | 285 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.923 | 229 | 286 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 2.0E-10 | 231 | 284 | IPR001965 | Zinc finger, PHD-type |
Pfam | PF00628 | 1.2E-10 | 231 | 286 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 232 | 283 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd15504 | 9.33E-24 | 232 | 283 | No hit | No description |
PROSITE profile | PS50071 | 14.107 | 747 | 807 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-10 | 749 | 811 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-12 | 752 | 812 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.36E-11 | 752 | 805 | No hit | No description |
Pfam | PF00046 | 4.5E-10 | 753 | 805 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-12 | 753 | 812 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 782 | 805 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 944 aa Download sequence Send to blast |
MDMNKGTGSG CAEDNVETGN YANSSQNPET LDNQSLPYTS QSLENNTGQR KNYKRTANRG 60 RKGYRVLADR NYPLRSSDCD TTVRVLRSRS AANKPPSDSA HTLVHSAANK FPSDSVHTLV 120 QPAAKRIKRG RPTKKGPNNE FSKIRQRVRY ILNRMNYEQS LLEAYANEGW KRQSLEKIRP 180 EKELERAKEE IVRCKLRIRE AFQNLDSLLS MGKLDESLFD NEGKISCEDI ICATCSSQYV 240 TLNNDIILCD GVCDRGFHQK CLNPPLLTKD IPAGDEGWLC PACDCKIDCI DVINELQGTN 300 LSISDSWEKV FPETAALAHG TIPKDAFDLP SEDSEDSDFD PNIAEEHVTG HEEGSSEEDE 360 DEGSDSDDSN FVTTCDNSEH LKEKEKVDDL GLPSEDSEDD DYDPAGPDSD KDIKEKQDES 420 DFTSDSDDFC AEIAKSCGRD EVSSGAKVGD PTNDLEGATA CSNTAIPNLT SNDLEIDQDE 480 VLPVLGRRQG QRLDYKKLYD DAYGEAPSDS SDGEEWSGKS TSEKGDEERN EVDSFLRKSS 540 RGTGTVQQSN DFLPQSARQS LDPDGLVNGQ HPGKLTSDVS NNKTNRKPLN NKEEVDDLGL 600 PSEDSEDDDY DPAGPDSDKD IEKKQSSSNE SDYSSASDDF CGEIAKSCGR EGVPSGAKAV 660 SGRRQDQSLD CKKLYDEACR EASSDSSDGE DWSGKCTPEK DSEKQSDTCR RTGAVRQSNG 720 STPDNARQSL HRTNGQHTEE LLTSDGSSST VHRRQFGPII YQRLHEHFKT DQYPKRAVKE 780 SLANELGLTF QQVSKWFETR RYKTRIAAKK NDSCVKNHSI KENQSSVAAH IEATDPKDLG 840 KKLNVCKNGA ANDVMASGIL NGGIKQDSPL KQDTSGGLGT HVSPPGSSPK GDPIENHGNN 900 TSSRCVGKPK DGYTGNVVLA LPVVDDRTKE AAMRELKKRK TGS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts with the shrunken (SHR) 26 bp feedback control element. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g19610.14.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231157.1 | 0.0 | homeobox protein HOX1A isoform X1 | ||||
Refseq | XP_014754573.1 | 0.0 | homeobox protein HOX1A isoform X1 | ||||
Swissprot | P46605 | 0.0 | HOX1A_MAIZE; Homeobox protein HOX1A | ||||
TrEMBL | A0A2K2D9D1 | 0.0 | A0A2K2D9D1_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G19610.2 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 5e-78 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g19610.14.p |
Entrez Gene | 100827663 |
Publications ? help Back to Top | |||
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