PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g19610.13.p
Common NameBRADI_2g19610, LOC100827663
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HB-PHD
Protein Properties Length: 944aa    MW: 103669 Da    PI: 4.6544
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g19610.13.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.11.3e-12753805456
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        R++f +   ++L e+F+ ++yp+++ +e LA++lgLt +qV+ WF  rR+k +
  Bradi2g19610.13.p 753 RRQFGPIIYQRLHEHFKTDQYPKRAVKESLANELGLTFQQVSKWFETRRYKTR 805
                        7778888889*****************************************87 PP
2PHD409.2e-14231286151
                        SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                        +C+ C++   + +++++lCdg C++ fH+kCl+++l ++++p g   wlC+ C++k
  Bradi2g19610.13.p 231 ICATCSSqyVTLNNDIILCDGvCDRGFHQKCLNPPLLTKDIPAGdeGWLCPACDCK 286
                        6******87667********77********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.28E-12225289IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.4E-12228285IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.923229286IPR019787Zinc finger, PHD-finger
SMARTSM002492.0E-10231284IPR001965Zinc finger, PHD-type
PfamPF006281.2E-10231286IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590232283IPR019786Zinc finger, PHD-type, conserved site
CDDcd155049.33E-24232283No hitNo description
PROSITE profilePS5007114.107747807IPR001356Homeobox domain
SMARTSM003894.3E-10749811IPR001356Homeobox domain
SuperFamilySSF466897.7E-12752812IPR009057Homeodomain-like
CDDcd000863.36E-11752805No hitNo description
PfamPF000464.5E-10753805IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-12753812IPR009057Homeodomain-like
PROSITE patternPS000270782805IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 944 aa     Download sequence    Send to blast
MDMNKGTGSG CAEDNVETGN YANSSQNPET LDNQSLPYTS QSLENNTGQR KNYKRTANRG  60
RKGYRVLADR NYPLRSSDCD TTVRVLRSRS AANKPPSDSA HTLVHSAANK FPSDSVHTLV  120
QPAAKRIKRG RPTKKGPNNE FSKIRQRVRY ILNRMNYEQS LLEAYANEGW KRQSLEKIRP  180
EKELERAKEE IVRCKLRIRE AFQNLDSLLS MGKLDESLFD NEGKISCEDI ICATCSSQYV  240
TLNNDIILCD GVCDRGFHQK CLNPPLLTKD IPAGDEGWLC PACDCKIDCI DVINELQGTN  300
LSISDSWEKV FPETAALAHG TIPKDAFDLP SEDSEDSDFD PNIAEEHVTG HEEGSSEEDE  360
DEGSDSDDSN FVTTCDNSEH LKEKEKVDDL GLPSEDSEDD DYDPAGPDSD KDIKEKQDES  420
DFTSDSDDFC AEIAKSCGRD EVSSGAKVGD PTNDLEGATA CSNTAIPNLT SNDLEIDQDE  480
VLPVLGRRQG QRLDYKKLYD DAYGEAPSDS SDGEEWSGKS TSEKGDEERN EVDSFLRKSS  540
RGTGTVQQSN DFLPQSARQS LDPDGLVNGQ HPGKLTSDVS NNKTNRKPLN NKEEVDDLGL  600
PSEDSEDDDY DPAGPDSDKD IEKKQSSSNE SDYSSASDDF CGEIAKSCGR EGVPSGAKAV  660
SGRRQDQSLD CKKLYDEACR EASSDSSDGE DWSGKCTPEK DSEKQSDTCR RTGAVRQSNG  720
STPDNARQSL HRTNGQHTEE LLTSDGSSST VHRRQFGPII YQRLHEHFKT DQYPKRAVKE  780
SLANELGLTF QQVSKWFETR RYKTRIAAKK NDSCVKNHSI KENQSSVAAH IEATDPKDLG  840
KKLNVCKNGA ANDVMASGIL NGGIKQDSPL KQDTSGGLGT HVSPPGSSPK GDPIENHGNN  900
TSSRCVGKPK DGYTGNVVLA LPVVDDRTKE AAMRELKKRK TGS*
Functional Description ? help Back to Top
Source Description
UniProtInteracts with the shrunken (SHR) 26 bp feedback control element.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g19610.13.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231157.10.0homeobox protein HOX1A isoform X1
RefseqXP_014754573.10.0homeobox protein HOX1A isoform X1
SwissprotP466050.0HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBLA0A2K2D9D10.0A0A2K2D9D1_BRADI; Uncharacterized protein
STRINGBRADI2G19610.20.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.15e-78Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Bellmann R,Werr W
    Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element.
    EMBO J., 1992. 11(9): p. 3367-74
    [PMID:1354614]