PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g19610.12.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HB-PHD | ||||||||
Protein Properties | Length: 949aa MW: 104050 Da PI: 4.6789 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 39.1 | 1.3e-12 | 758 | 810 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 R++f + ++L e+F+ ++yp+++ +e LA++lgLt +qV+ WF rR+k + Bradi2g19610.12.p 758 RRQFGPIIYQRLHEHFKTDQYPKRAVKESLANELGLTFQQVSKWFETRRYKTR 810 7778888889*****************************************87 PP | |||||||
2 | PHD | 39.9 | 9.3e-14 | 253 | 308 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C++ + +++++lCdg C++ fH+kCl+++l ++++p g wlC+ C++k Bradi2g19610.12.p 253 ICATCSSqyVTLNNDIILCDGvCDRGFHQKCLNPPLLTKDIPAGdeGWLCPACDCK 308 6******87667********77********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.31E-12 | 247 | 311 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 5.4E-12 | 250 | 307 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.923 | 251 | 308 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 2.0E-10 | 253 | 306 | IPR001965 | Zinc finger, PHD-type |
Pfam | PF00628 | 1.2E-10 | 253 | 308 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 9.89E-24 | 254 | 305 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 254 | 305 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50071 | 14.107 | 752 | 812 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-10 | 754 | 816 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-12 | 757 | 817 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.77E-11 | 757 | 810 | No hit | No description |
Pfam | PF00046 | 4.5E-10 | 758 | 810 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-12 | 758 | 817 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 787 | 810 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 949 aa Download sequence Send to blast |
MDMNKGTGSG CAEDNVETGN YANSSQNPET LDNQSLPYTS QSLENNTGQR KNYKRTANRG 60 RKGYRVLADR NYPLRSSDCD TTVRVLRSRS AANKPPSDSA HTLVHSAANK FPSDSVHTLV 120 QPAAKRIKRG RPTKKGPNNE FSKIRQRVRY ILNRMNYEQS LLEAYANEGW KRQSCDFLVV 180 LSCDVKMLVT NTQTYSLEKI RPEKELERAK EEIVRCKLRI REAFQNLDSL LSMGKLDESL 240 FDNEGKISCE DIICATCSSQ YVTLNNDIIL CDGVCDRGFH QKCLNPPLLT KDIPAGDEGW 300 LCPACDCKID CIDVINELQG TNLSISDSWE KVFPETAALA HGTIPKDAFD LPSEDSEDSD 360 FDPNIAEEHV TGHEEGSSEE DEDEGSDSDD SNFVTTCDNS EHLKEKEKVD DLGLPSEDSE 420 DDDYDPAGPD SDKDIKEKQD ESDFTSDSDD FCAEIAKSCG RDEVSSGAKD AYGEAPSDSS 480 DGEEWSGKST SEKGDEERNE VDSFLRKSSR GTGTVQQSND FLPQSARQSL DPDGLVNGQH 540 PGKLTSDVSN NKTNRKPLNN KEEVDDLGLP SEDSEDDDYD PAGPDSDKDI EKKQSSSNES 600 DYSSASDDFC GEIAKSCGRE GVPSGAKAGG HPTNDLEGTT VRTNAAISNL PSKDSQMDQD 660 VVSPVSGRRQ DQSLDCKKLY DEACREASSD SSDGEDWSGK CTPEKDSEKQ SDTCRRTGAV 720 RQSNGSTPDN ARQSLHRTNG QHTEELLTSD GSSSTVHRRQ FGPIIYQRLH EHFKTDQYPK 780 RAVKESLANE LGLTFQQVSK WFETRRYKTR IAAKKNDSCV KNHSIKENQS SVAAHIEATD 840 PKDLGKKLNV CKNGAANDVM ASGILNGGIK QDSPLKQDTS GGLGTHVSPP GSSPKGDPIE 900 NHGNNTSSRC VGKPKDGYTG NVVLALPVVD DRTKEAAMRE LKKRKTGS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts with the shrunken (SHR) 26 bp feedback control element. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g19610.12.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014754574.1 | 0.0 | homeobox protein HOX1A isoform X2 | ||||
Swissprot | P46605 | 1e-154 | HOX1A_MAIZE; Homeobox protein HOX1A | ||||
TrEMBL | I1HHJ3 | 0.0 | I1HHJ3_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G19610.2 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 1e-73 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g19610.12.p |
Publications ? help Back to Top | |||
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