PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g19610.11.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HB-PHD
Protein Properties Length: 949aa    MW: 104050 Da    PI: 4.6789
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g19610.11.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.11.3e-12758810456
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        R++f +   ++L e+F+ ++yp+++ +e LA++lgLt +qV+ WF  rR+k +
  Bradi2g19610.11.p 758 RRQFGPIIYQRLHEHFKTDQYPKRAVKESLANELGLTFQQVSKWFETRRYKTR 810
                        7778888889*****************************************87 PP
2PHD39.99.3e-14253308151
                        SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                        +C+ C++   + +++++lCdg C++ fH+kCl+++l ++++p g   wlC+ C++k
  Bradi2g19610.11.p 253 ICATCSSqyVTLNNDIILCDGvCDRGFHQKCLNPPLLTKDIPAGdeGWLCPACDCK 308
                        6******87667********77********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.31E-12247311IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.4E-12250307IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.923251308IPR019787Zinc finger, PHD-finger
SMARTSM002492.0E-10253306IPR001965Zinc finger, PHD-type
PfamPF006281.2E-10253308IPR019787Zinc finger, PHD-finger
CDDcd155049.89E-24254305No hitNo description
PROSITE patternPS013590254305IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007114.107752812IPR001356Homeobox domain
SMARTSM003894.3E-10754816IPR001356Homeobox domain
SuperFamilySSF466897.7E-12757817IPR009057Homeodomain-like
CDDcd000862.77E-11757810No hitNo description
PfamPF000464.5E-10758810IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-12758817IPR009057Homeodomain-like
PROSITE patternPS000270787810IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 949 aa     Download sequence    Send to blast
MDMNKGTGSG CAEDNVETGN YANSSQNPET LDNQSLPYTS QSLENNTGQR KNYKRTANRG  60
RKGYRVLADR NYPLRSSDCD TTVRVLRSRS AANKPPSDSA HTLVHSAANK FPSDSVHTLV  120
QPAAKRIKRG RPTKKGPNNE FSKIRQRVRY ILNRMNYEQS LLEAYANEGW KRQSCDFLVV  180
LSCDVKMLVT NTQTYSLEKI RPEKELERAK EEIVRCKLRI REAFQNLDSL LSMGKLDESL  240
FDNEGKISCE DIICATCSSQ YVTLNNDIIL CDGVCDRGFH QKCLNPPLLT KDIPAGDEGW  300
LCPACDCKID CIDVINELQG TNLSISDSWE KVFPETAALA HGTIPKDAFD LPSEDSEDSD  360
FDPNIAEEHV TGHEEGSSEE DEDEGSDSDD SNFVTTCDNS EHLKEKEKVD DLGLPSEDSE  420
DDDYDPAGPD SDKDIKEKQD ESDFTSDSDD FCAEIAKSCG RDEVSSGAKD AYGEAPSDSS  480
DGEEWSGKST SEKGDEERNE VDSFLRKSSR GTGTVQQSND FLPQSARQSL DPDGLVNGQH  540
PGKLTSDVSN NKTNRKPLNN KEEVDDLGLP SEDSEDDDYD PAGPDSDKDI EKKQSSSNES  600
DYSSASDDFC GEIAKSCGRE GVPSGAKAGG HPTNDLEGTT VRTNAAISNL PSKDSQMDQD  660
VVSPVSGRRQ DQSLDCKKLY DEACREASSD SSDGEDWSGK CTPEKDSEKQ SDTCRRTGAV  720
RQSNGSTPDN ARQSLHRTNG QHTEELLTSD GSSSTVHRRQ FGPIIYQRLH EHFKTDQYPK  780
RAVKESLANE LGLTFQQVSK WFETRRYKTR IAAKKNDSCV KNHSIKENQS SVAAHIEATD  840
PKDLGKKLNV CKNGAANDVM ASGILNGGIK QDSPLKQDTS GGLGTHVSPP GSSPKGDPIE  900
NHGNNTSSRC VGKPKDGYTG NVVLALPVVD DRTKEAAMRE LKKRKTGS*
Functional Description ? help Back to Top
Source Description
UniProtInteracts with the shrunken (SHR) 26 bp feedback control element.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g19610.11.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754574.10.0homeobox protein HOX1A isoform X2
SwissprotP466051e-154HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBLI1HHJ30.0I1HHJ3_BRADI; Uncharacterized protein
STRINGBRADI2G19610.20.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-73Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Bellmann R,Werr W
    Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element.
    EMBO J., 1992. 11(9): p. 3367-74
    [PMID:1354614]