PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g19070.1.p | ||||||||
Common Name | BRADI_2g19070, LOC100844257 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 239aa MW: 25497.6 Da PI: 7.5024 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.2 | 6.9e-33 | 159 | 217 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s fprsYYrCt+++C+vkk+v+r a+d+ vv++tYeg Hnh+ Bradi2g19070.1.p 159 LDDGYRWRKYGQKAVKNSAFPRSYYRCTHHTCNVKKQVQRLAKDTAVVVTTYEGVHNHP 217 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-33 | 145 | 217 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-28 | 151 | 218 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.552 | 154 | 219 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-38 | 159 | 218 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.9E-26 | 160 | 217 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDNSQEEVDR GRHMSMQPED ELPPVQQFQY LQSPPMAALM EQLQASSACD STAALGAAAA 60 GIPELVDWAS LLLPLGSAAA GTSSQSQQQQ VEAAAGVGVG GSEAETMVMS GGGGDELQGI 120 KGNNGAAGGS GRGKGGRKGK EKASRPRFAF QTRSENDVLD DGYRWRKYGQ KAVKNSAFPR 180 SYYRCTHHTC NVKKQVQRLA KDTAVVVTTY EGVHNHPCEK LMEALSPILR QLQFLSQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-26 | 150 | 216 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 9e-26 | 150 | 216 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00539 | DAP | Transfer from AT5G41570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g19070.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ840412 | 1e-109 | DQ840412.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 13 (WRKY13) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566009.2 | 1e-177 | probable WRKY transcription factor 75 | ||||
TrEMBL | I1HHB6 | 1e-176 | I1HHB6_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G19070.1 | 1e-177 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64000.1 | 6e-56 | WRKY DNA-binding protein 56 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g19070.1.p |
Entrez Gene | 100844257 |