PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g18530.1.p | ||||||||
Common Name | BRADI_2g18530, LOC100831237 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 244aa MW: 25315.9 Da PI: 6.671 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.2 | 1.1e-30 | 156 | 213 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v++tYeg+H h Bradi2g18530.1.p 156 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCSVKKRVERDRDDPSYVVTTYEGTHSH 213 59*******************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.4E-33 | 142 | 216 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.72E-28 | 148 | 216 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.215 | 151 | 216 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-34 | 156 | 215 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-24 | 157 | 213 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAAVGAAPVL FYQQPAPAAA PALAAGDAIG CFFSPSSPMS SFFSSHGHGG SSSTAGSSPA 60 SGFSPALPTQ PPPVTDPAAQ FDISEYLFDD GIFAAATDAA APPSGAAVAA AMDGVGASAV 120 AALGRSPADQ QQQQAAVERP RTERIAFRTR SEIEILDDGY KWRKYGKKSV KNSPNPRNYY 180 RCSTEGCSVK KRVERDRDDP SYVVTTYEGT HSHVSPSTVY YASQDAASGR FFVAGTQPPG 240 SLH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-25 | 146 | 217 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-25 | 146 | 217 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g18530.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837881 | 1e-146 | CT837881.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124O14, full insert sequence. | |||
GenBank | DQ298179 | 1e-146 | DQ298179.1 Oryza sativa WRKY transcription factor 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568011.1 | 1e-176 | probable WRKY transcription factor 48 | ||||
TrEMBL | I1HH54 | 1e-174 | I1HH54_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G18530.1 | 1e-175 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 2e-41 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g18530.1.p |
Entrez Gene | 100831237 |