PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g18396.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 126aa MW: 14559.5 Da PI: 10.8506 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 37.2 | 9.8e-12 | 12 | 54 | 47 | 90 |
FAR1 47 ktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k +k+rr+++ + t+Cka++ vk++ d++w+v + eHnH+l Bradi2g18396.1.p 12 KPRKKRRRETIKGTNCKARMIVKLM-DSRWQVVYFIGEHNHPLI 54 3467899999***************.9***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-9 | 12 | 54 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MRLIKKMLCM KKPRKKRRRE TIKGTNCKAR MIVKLMDSRW QVVYFIGEHN HPLITKPSLT 60 KYLRSHQGIP KEEDNFLRIL HDSNLETGRM MQLMSSFYGS GLLVPYTTKA ISNCLGCVHK 120 PVVVI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 4 | 16 | KKMLCMKKPRKKR |
2 | 10 | 18 | KKPRKKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g18396.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024312602.1 | 6e-42 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A0Q3K315 | 5e-88 | A0A0Q3K315_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G10750.1 | 2e-59 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7287 | 5 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 4e-09 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g18396.1.p |