PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g18200.1.p
Common NameBRADI_2g18200, LOC106866126
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 328aa    MW: 34189.9 Da    PI: 8.2225
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g18200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.2e-08215257954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r RR+++ +++  Lr+l+P     +s+K++ a++L +A  Y++ L
  Bradi2g18200.1.p 215 ARLRREKVSERLRALRRLVPGG---GSGKMDTASMLHQAACYLSFL 257
                       599******************9...9*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.281206257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-8209262No hitNo description
SuperFamilySSF474591.18E-11211266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-9212263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-9214266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5216257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDGFGWSTQQ TPPGAASCPK DDALLAAFLG GASTTFELLH SAAAGISDDA YGHELPPSCQ  60
DDDILRRLLR CRDSVNSPLP SAVDVPSKAA ILHNSAGSLR APAPPIGQHD SSFAFFPNAG  120
DAFSGHSTAT GNISSGDSNT HDAEVASPPC IVPATRTTTG TEAMAQAKQE AIIYRAAAAA  180
YSSSPAAAAG ADPPLGPRRR RRNVRISSEP QTVAARLRRE KVSERLRALR RLVPGGGSGK  240
MDTASMLHQA ACYLSFLKAQ LARFQAMAAA DGRASYSSNS SSMQRYDNPP ESLGGGNIGN  300
GGAVLSFRRD DSVDGYVRGN NWNMQSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g18200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754355.10.0uncharacterized protein LOC106866126
TrEMBLI1HH130.0I1HH13_BRADI; Uncharacterized protein
STRINGBRADI2G18200.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5002922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.15e-13bHLH family protein