PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g17615.1.p | ||||||||
Common Name | BRADI_2g17615 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 646aa MW: 74925.2 Da PI: 8.0274 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77 | 3.7e-24 | 28 | 127 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 +fY++YA++vGFsvr+ ++++ ++ +++r+f C k+g+r++++++ ++k+ + r+ tr+gC+a+++vk++kdgk+ v+ + Bradi2g17615.1.p 28 EFYKAYAHNVGFSVRIGHKRTV--DNVVVWRRFLCGKSGFRRNNEEEpkkelngekkgdEKKRTHARKITRCGCEAMITVKRMKDGKYAVSYF 118 6****************99988..889****************999999*******9977788889*************************** PP FAR1 82 eleHnHela 90 ++eH+He++ Bradi2g17615.1.p 119 HEEHTHEFV 127 *******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-21 | 28 | 127 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 9.0E-30 | 249 | 341 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.67 | 530 | 566 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.6E-6 | 541 | 568 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 1.3E-4 | 541 | 562 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 646 aa Download sequence Send to blast |
ASSCTPECDE NLKPAVGMAF DNMEEVEEFY KAYAHNVGFS VRIGHKRTVD NVVVWRRFLC 60 GKSGFRRNNE EEPKKELNGE KKGDEKKRTH ARKITRCGCE AMITVKRMKD GKYAVSYFHE 120 EHTHEFVTPR KQHLIKSNRQ VSDKAKDTLF TCHAASIGTA GAFRLLRVGE GGFEFVGCTK 180 RDLQNYHRDM RSTFKDSDAQ MFIDNLRKRQ EINPGFFFEY VLDDKNRLTH VFWADACCRK 240 NYALFGEMVS FDSTYSTNQY SMIFCPFTGI NHHMASVFYG AALIVNETIE SYKWVFQTFL 300 KAMDGAAPRL IVTDEDQSMK IAIEDVMHNT VHRLCMWHIM RKLSEKVGPP LREDEHFYST 360 INSCVWGSEN PTEFEAKWSS MISEFGLEDN TWFSRRYELR ESWIPVYFRG VFLGEILRTT 420 SRSESANSFF NHFIGYKHAL VEFWIRIGTA LEEQRQNELK ADHECLNSMP PLITSWEIEK 480 HASLFFTHAF FSSFQKEVRA SRDHCLIENI SQEGDVRTTI IGGARSFKSR EVQFNTTSKS 540 ARCSCMLFET RGIPCRHIIM VLRGAKMSEL PSHFILDRWK KTVNRRVVYD SSGNLLEANE 600 SNSLDLAKRK MVSEIRQTLN DTIKLAEQSP EELEALRNLL VDMKRN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 89 | KKRTH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g17615.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179498.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0Q3ML87 | 0.0 | A0A0Q3ML87_BRADI; Uncharacterized protein (Fragment) | ||||
STRING | TRIUR3_33462-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-123 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g17615.1.p |