PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g17610.1.p
Common NameBRADI_2g17610, LOC100824064
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family RAV
Protein Properties Length: 409aa    MW: 43719.9 Da    PI: 10.1439
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g17610.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.18.9e-1390138155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      r  r++lg+f  + eAa+a++aa+++++g
  Bradi2g17610.1.p  90 SRYKGVVPQP-NGRWGAQIYE------RhSRVWLGTFTGEAEAARAYDAAAQRFRG 138
                       78****9888.8*********......44**********99*************98 PP
2B393.91.1e-29216319186
                       EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                       f+k+ tpsdv+k++rlv+pk++ae+h                  +g++++++ l +ed  g+ W+++++y+++s++yvltkGW++Fvk++gL+
  Bradi2g17610.1.p 216 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqqlgsssgavfsgsgSGESNKGMLLNFEDGAGKAWRFRYSYWNSSQSYVLTKGWSRFVKEKGLC 308
                       89**************************************99996777899****************************************** PP

                       TT-EEEEEE-S CS
                B3  76 egDfvvFkldg 86 
                       +gD v F+++ 
  Bradi2g17610.1.p 309 AGDAVGFYRSA 319
                       *******9654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.32E-1690146IPR016177DNA-binding domain
PfamPF008472.1E-890138IPR001471AP2/ERF domain
CDDcd000184.78E-1290148No hitNo description
PROSITE profilePS5103219.7391146IPR001471AP2/ERF domain
SMARTSM003808.9E-2591152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1991146IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.2E-39206348IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-28211318IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-24214318No hitNo description
PROSITE profilePS5086312.196216337IPR003340B3 DNA binding domain
PfamPF023623.4E-26216319IPR003340B3 DNA binding domain
SMARTSM010196.4E-20216326IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDSTTSCLLD ESSSGGSASM ATPTGKIKSP PSSPSPAPTK MTPLHRVGSG AATSAVMDVD  60
ASATAEEEAD SAAGRRIAMA AAVNNKLPSS RYKGVVPQPN GRWGAQIYER HSRVWLGTFT  120
GEAEAARAYD AAAQRFRGRD AVTNFRALPS DAAELRFLAS RSKGEVVDML RKHTYLDELA  180
LFTSSSSPPA PPDFSPSSSS PAPAAARQVR DREHLFDKTV TPSDVGKLNR LVIPKQHAEK  240
HFPLQQLGSS SGAVFSGSGS GESNKGMLLN FEDGAGKAWR FRYSYWNSSQ SYVLTKGWSR  300
FVKEKGLCAG DAVGFYRSAS ANGNGNGSQQ QLFIDCKLRT KADTRSSSPR PGAVVRSVRL  360
FGVDLLAAAP ELETKTSICK RSRNHSEASP DHPTHAVFKR RCIDFALT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-4821335211130DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g17610.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0982982e-78FP098298.1 Phyllostachys edulis cDNA clone: bphyem207d01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565959.10.0AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H41e-137Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLI1HGT60.0I1HGT6_BRADI; Uncharacterized protein
STRINGBRADI2G17610.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-93related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]