PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g17280.1.p | ||||||||
Common Name | BRADI_2g17280, LOC100844971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 30938.8 Da PI: 6.9802 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.6e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde+l ++v+ +G g +W + +++ g++R++k+c++rw++yl Bradi2g17280.1.p 14 RGPWSPEEDEQLRRYVRAHGIGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 89******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 33.9 | 7.2e-11 | 71 | 111 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 T+eEd + + G++ W+ Ia++++ gRt++++k++w++ Bradi2g17280.1.p 71 YTAEEDRVICSLYGSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111 69*****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.714 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.36E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.66E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 14.375 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 7.8E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-9 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-21 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.18E-9 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGRAPCCDKA SVKRGPWSPE EDEQLRRYVR AHGIGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPDIRHGG YTAEEDRVIC SLYGSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKAVAM 120 GMQHATGGSA FSAPHSQCAL SPAASGSSSS TVDTTSSSAG GDIFFAAAMD QQPWPPQGLL 180 THFHAQSEPP APVLPSPDTV ALDVVSGAAG DWAHGPMDNV DVFLPELGGT GEQSLLFPYG 240 ELLFSGLLLQ ADQDQCKAAA VGVGGGVEHL SASTCSYFFP NSNMAEITYN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g17280.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358161 | 1e-130 | AK358161.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1070D08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565943.1 | 0.0 | transcription factor RAX1 | ||||
TrEMBL | I1HGP8 | 0.0 | I1HGP8_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G17280.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 3e-69 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g17280.1.p |
Entrez Gene | 100844971 |