PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g16647.1.p

Common Name

BRADI_2g16647, LOC100835009

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HB-other

Protein Properties

Length: 1858aa MW: 206301 Da PI: 5.4819

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g16647.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.6e-19	46	100	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++ql++Le+ ++ ++yp++++r eLA+kl+Lt+rq ++WF+ rR k++k Bradi2g16647.1.p 46 KRVMKTPYQLQVLEKTYADDPYPNETTRVELAAKLELTDRQLQMWFCHRRLKDRK 100 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-18	16	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.45E-17	31	101	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.941	41	101	IPR001356	Homeobox domain
SMART	SM00389	3.9E-17	43	105	IPR001356	Homeobox domain
CDD	cd00086	3.29E-15	46	101	No hit	No description
Pfam	PF00046	6.4E-17	46	100	IPR001356	Homeobox domain
PROSITE profile	PS50827	15.257	594	653	IPR018501	DDT domain
SMART	SM00571	2.4E-14	594	653	IPR018501	DDT domain
Pfam	PF02791	8.1E-16	596	650	IPR018501	DDT domain
Pfam	PF05066	2.2E-15	775	842	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	4.7E-9	997	1039	IPR028942	WHIM1 domain
Pfam	PF15613	4.0E-13	1174	1245	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1858 aa Download sequence Send to blast
MDSSGDEGAG EAPGSPAPAP SSPPAAAAAA GGGAGASGFR SRPTAKRVMK TPYQLQVLEK 60 TYADDPYPNE TTRVELAAKL ELTDRQLQMW FCHRRLKDRK QPVKREEEVS VPVIPSPSVL 120 QPSVPNSKLA RGSGSTYSQQ LLPCSQRGRG RDRSSAVPRI SATEIARRYY EPHQVMLPPL 180 AAVQPMQGAH QMIDYVQELI GEQLREDGPV LGVHFDPLPP GAFGTPIVQE QRKQPFRSYE 240 TKASEFLPTI DPSVPSTVTR KRKSMDGNSP HLGSRAVRQY QFLPEQPSVY ERPSQQRFHD 300 APTEASNLRI SSVSTGSRFL HGAEHEPSYA FHGQISGPSH LSQHGKPLIF PSGSTDYEAA 360 SSYINVSAAP IEGQFGIPQV AGFKTPLACS EGVDYRCEDV YRLDKKRKHS EEAKIAKEVD 420 VHEKRIRKEL EKQDVLNRKR EEQMRREMER HGREKKKEEE RLMREKQREE ERLQKEQWRE 480 HKRKEKFLLK QSLRAEKLRQ KEELRKEKEA ARQKAANEKA TARRIAREYL ELMEDERLEL 540 MELVSRSKGL PSMLSLDSDT LQQLDSFRGM LTQFPAEVVR LKIPFSVKPW ISSENNIGSL 600 LMVWKFFFTF ADILGLPSFT LDEFMQSLHD YDSRLLAELH VALLKSIIKD IENVARTSSD 660 AFGVNQSSSA NPGGGHPQIV EGAYAWGFNI LTWQRHLTYH TWPEILRQFG LSAGFGPQLK 720 KRSVEDVYCH DDNEGRTSQD VISTLRNGSA ALKSAALMKE RGYTNRRSRH RLTPGTVKFA 780 AFHVLSLEGD KGLSILEVAE KIQKSGLRDL TTSKTPEASI SAALSRDTKL FERTAPSTYC 840 VKAPYRKDPA DSEAVLSAAR EKIKLFQNAL SECEEVEKDV DDADRGDDDS ECDDADDDPD 900 GDEVNVEEKN VKASVIRAHD GGIPTVPCDI NDELNTLGNT SMPSSPHSRS QSNSSGMLDK 960 ATAASTSSDP PIGASSAYHE VATDSAQDTE IDESNQGESW VEGLADGDYC DLSVEERLNA 1020 LVALVNVATE GNSMRAILEE RLEAANALKK QMWAESQLDK RRSREDFAGK IEHDSCMGLK 1080 AIADQENSVG ECNLPPVQNL IKENDGKASS VNNDLLVGQH SQLNAGNMVH EVNGVSRESN 1140 PESLSVQQYA SSDKTRSQLK SFIGHKAEQL YVYRSLPLGQ DRRLNRYWQF STSASPNDPG 1200 SGRIFFESRD GYWRLIDSAE AFDALVASLD TRGIRESHLH SMLQSIESAF KDAIGRRKCA 1260 TVEHPAGSIL RNGSSEIISP NHSNEFGSPC STLSGVVSDN TKVYSDSFKI ELGCDDLEKV 1320 AILKRASMFL KWMWRECNNH QSTCAMKYGK KRCSELIQQC DSCYQIYSTE EMHCSSCHKT 1380 FKSVHSLSEH ASQCDEKWRT DPDWKMQISD DSIPIRLRLL KLLLASIEVS IPAEALQPFW 1440 TDGYRKSWGL KLYSTSSTKE VFQMLTVLEG AIRRNYLSSN FKTTAELLNS MAQDNSNQNS 1500 VARSGSADVL PWVPNTTAAV TLRLLDLDSA LSCTLDQKAG LNKEQEWGDF PPGDSSKKKK 1560 EQEAGDFMKF PPRCTAVKNK QEMESVGATG FVQRDEAWLT PSTGHRGRGR GGRGRGRGGR 1620 SRSRGGRVPR GIGSSPKSEL RDDNNVSLKV PYKQAPRGRG RGRSRGRGRG RGCGRGLRTV 1680 RPRQPTEHGS RSVPKANLLG SFGMLGNAKP TTVPSPQSSG AEEWGLERRA YIEDDENNSV 1740 SQSDESEEEN GEPMNEDYNE QLPDYSKDNS GSSPLQMMDD GSEDDEEGDE EVEDDGVDYD 1800 AEHPIDEDNN DAEMSGNDGL GNDEDDDDDD DAGGGQDGMG NTDDNEDGTS YSSEFSE*

Sequence ? help Back to Top

Protein Sequence Length: 1858 aa Download sequence Send to blast

MDSSGDEGAG EAPGSPAPAP SSPPAAAAAA GGGAGASGFR SRPTAKRVMK TPYQLQVLEK  60
TYADDPYPNE TTRVELAAKL ELTDRQLQMW FCHRRLKDRK QPVKREEEVS VPVIPSPSVL  120
QPSVPNSKLA RGSGSTYSQQ LLPCSQRGRG RDRSSAVPRI SATEIARRYY EPHQVMLPPL  180
AAVQPMQGAH QMIDYVQELI GEQLREDGPV LGVHFDPLPP GAFGTPIVQE QRKQPFRSYE  240
TKASEFLPTI DPSVPSTVTR KRKSMDGNSP HLGSRAVRQY QFLPEQPSVY ERPSQQRFHD  300
APTEASNLRI SSVSTGSRFL HGAEHEPSYA FHGQISGPSH LSQHGKPLIF PSGSTDYEAA  360
SSYINVSAAP IEGQFGIPQV AGFKTPLACS EGVDYRCEDV YRLDKKRKHS EEAKIAKEVD  420
VHEKRIRKEL EKQDVLNRKR EEQMRREMER HGREKKKEEE RLMREKQREE ERLQKEQWRE  480
HKRKEKFLLK QSLRAEKLRQ KEELRKEKEA ARQKAANEKA TARRIAREYL ELMEDERLEL  540
MELVSRSKGL PSMLSLDSDT LQQLDSFRGM LTQFPAEVVR LKIPFSVKPW ISSENNIGSL  600
LMVWKFFFTF ADILGLPSFT LDEFMQSLHD YDSRLLAELH VALLKSIIKD IENVARTSSD  660
AFGVNQSSSA NPGGGHPQIV EGAYAWGFNI LTWQRHLTYH TWPEILRQFG LSAGFGPQLK  720
KRSVEDVYCH DDNEGRTSQD VISTLRNGSA ALKSAALMKE RGYTNRRSRH RLTPGTVKFA  780
AFHVLSLEGD KGLSILEVAE KIQKSGLRDL TTSKTPEASI SAALSRDTKL FERTAPSTYC  840
VKAPYRKDPA DSEAVLSAAR EKIKLFQNAL SECEEVEKDV DDADRGDDDS ECDDADDDPD  900
GDEVNVEEKN VKASVIRAHD GGIPTVPCDI NDELNTLGNT SMPSSPHSRS QSNSSGMLDK  960
ATAASTSSDP PIGASSAYHE VATDSAQDTE IDESNQGESW VEGLADGDYC DLSVEERLNA  1020
LVALVNVATE GNSMRAILEE RLEAANALKK QMWAESQLDK RRSREDFAGK IEHDSCMGLK  1080
AIADQENSVG ECNLPPVQNL IKENDGKASS VNNDLLVGQH SQLNAGNMVH EVNGVSRESN  1140
PESLSVQQYA SSDKTRSQLK SFIGHKAEQL YVYRSLPLGQ DRRLNRYWQF STSASPNDPG  1200
SGRIFFESRD GYWRLIDSAE AFDALVASLD TRGIRESHLH SMLQSIESAF KDAIGRRKCA  1260
TVEHPAGSIL RNGSSEIISP NHSNEFGSPC STLSGVVSDN TKVYSDSFKI ELGCDDLEKV  1320
AILKRASMFL KWMWRECNNH QSTCAMKYGK KRCSELIQQC DSCYQIYSTE EMHCSSCHKT  1380
FKSVHSLSEH ASQCDEKWRT DPDWKMQISD DSIPIRLRLL KLLLASIEVS IPAEALQPFW  1440
TDGYRKSWGL KLYSTSSTKE VFQMLTVLEG AIRRNYLSSN FKTTAELLNS MAQDNSNQNS  1500
VARSGSADVL PWVPNTTAAV TLRLLDLDSA LSCTLDQKAG LNKEQEWGDF PPGDSSKKKK  1560
EQEAGDFMKF PPRCTAVKNK QEMESVGATG FVQRDEAWLT PSTGHRGRGR GGRGRGRGGR  1620
SRSRGGRVPR GIGSSPKSEL RDDNNVSLKV PYKQAPRGRG RGRSRGRGRG RGCGRGLRTV  1680
RPRQPTEHGS RSVPKANLLG SFGMLGNAKP TTVPSPQSSG AEEWGLERRA YIEDDENNSV  1740
SQSDESEEEN GEPMNEDYNE QLPDYSKDNS GSSPLQMMDD GSEDDEEGDE EVEDDGVDYD  1800
AEHPIDEDNN DAEMSGNDGL GNDEDDDDDD DAGGGQDGMG NTDDNEDGTS YSSEFSE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	258	263	TRKRKS
2	1660	1670	RGRSRGRGRGR
3	1666	1675	RGRGRGCGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g16647.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003565920.1	0.0	homeobox-DDT domain protein RLT2 isoform X2
TrEMBL	A0A0Q3FZZ5	0.0	A0A0Q3FZZ5_BRADI; Uncharacterized protein
STRING	BRADI2G16647.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52
Representative plant	OGRP1577	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	Bradi2g16647.1.p
Entrez Gene	100835009