PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g16444.1.p
Common NameBRADI_2g16444
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WOX
Protein Properties Length: 471aa    MW: 48594.5 Da    PI: 7.1497
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g16444.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.33.6e-1568127256
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                       + R+++ +eq+++Le+ F+    +p ++e++++ ++l     + +++V++WFqNr+ + k
  Bradi2g16444.1.p  68 KARWSPRPEQIRILEAIFNAgVVNPPRDEIRRIRARLqefgPVADANVFYWFQNRKSRTK 127
                       79*****************99****************99999****************99 PP
2Wus_type_Homeobox103.21.8e-3367129264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe+++++G+++P+++ei+ri+a+L+e+G + d+NVfyWFQNrk+R ++k
   Bradi2g16444.1.p  67 TKARWSPRPEQIRILEAIFNAGVVNPPRDEIRRIRARLQEFGPVADANVFYWFQNRKSRTKHK 129
                        689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.2E-1164133IPR009057Homeodomain-like
PROSITE profilePS5007110.25264129IPR001356Homeobox domain
SMARTSM003894.1E-566133IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-566133IPR009057Homeodomain-like
PfamPF000468.2E-1368128IPR001356Homeobox domain
CDDcd000868.37E-668129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MASSNKHWPS MFRANPACGF EQYQPQSDLM NNDNPHSHGS SPSSLLSGSK PSLLSSGMDQ  60
EGRSTETKAR WSPRPEQIRI LEAIFNAGVV NPPRDEIRRI RARLQEFGPV ADANVFYWFQ  120
NRKSRTKHKL RQAAASAARA SSSSSSPAPA PPVTPPPPRK HLVLGSNNSS SSSSSDRSSG  180
SSSGGGKAAS VVKPPSAAMA ADLFAPLSGC SQLYYNRHPM LTAAPEPQPA PLTLQWPPPS  240
QSQQQYSYYL PATELGGVVL GSGSGHAHAH AQAPSMASPG AAALLDGALG LTQDSIDGMS  300
SYAAVKGPCD TNGQFSINAA AASVGVSDAM MSAAVFTEEE DKASWLGGGR LLHYASAAAT  360
SDVVSTAAPL SVNAAPSSAL TDQLVLQELL DAGMIGGGGV PMATVVVMAA AGPDAGAAVQ  420
CYSVPAMARL DVARLFGEAA LLLRHTGEPV PVDAARGVTL DHGALYYVLV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g16444.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2347529e-63AM234752.1 Oryza sativa partial mRNA for WOX9 protein.
GenBankAP0037609e-63AP003760.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0063G05.
GenBankAP0149579e-63AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126099e-63CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314518.10.0WUSCHEL-related homeobox 12-like
TrEMBLA0A0Q3MKL30.0A0A0Q3MKL3_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Representative plantOGRP61031220
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.19e-39homeobox-3