PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g16442.1.p
Common NameBRADI_2g16442
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 296aa    MW: 32278.2 Da    PI: 6.322
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g16442.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19121172256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr+++ +g+++AeIrd +    r +r++lg+f taeeAa a++aa+++++g+
  Bradi2g16442.1.p 121 SYRGVRRRP-WGKFAAEIRDTRR---RgARVWLGTFATAEEAALAYDAAALRMRGP 172
                       69*******.**********433...24**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.31E-15120179No hitNo description
SuperFamilySSF541715.82E-21121180IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.7E-30121179IPR001471AP2/ERF domain
PfamPF008472.3E-15121171IPR001471AP2/ERF domain
PROSITE profilePS5103223.024121179IPR001471AP2/ERF domain
SMARTSM003801.1E-33121185IPR001471AP2/ERF domain
PRINTSPR003671.2E-10122133IPR001471AP2/ERF domain
PRINTSPR003671.2E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAIGAPAGPT SHSRQPQPQG DRSSILENVW ASIMTTTAPA PAPEEKEEKP AILRRLPSLG  60
RWISMGADEW DELLNLDAAS TPPPFPSADE EEDHQHPAPI TASDSKASSS SSPAPATAKK  120
SYRGVRRRPW GKFAAEIRDT RRRGARVWLG TFATAEEAAL AYDAAALRMR GPRASLNHPL  180
HLVQRRLLDL DLMAAAAPAA DDQAPSRKRR KKMVHSASSP TTAADHARIV VGAAEDDFRE  240
ITSDQDQMVS FAASSVHRDR GIPMQDQYVM SSRSVIELEE IGGEYWDYLF PPDIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-25120182466ATERF1
3gcc_A2e-25120182466ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g16442.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314516.10.0ethylene-responsive transcription factor 15
TrEMBLA0A0Q3G2U40.0A0A0Q3G2U4_BRADI; Uncharacterized protein
STRINGOPUNC05G23490.12e-73(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-17ethylene responsive element binding factor 2