PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g16357.2.p
Common NameBRADI_2g16357, LOC100829894
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 410aa    MW: 43239.9 Da    PI: 7.1982
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g16357.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.51.4e-33200257259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vk+s+fprsYYrCt ++Cpvkk+vers +d  vv++tYeg+H+h+
  Bradi2g16357.2.p 200 EDGYRWRKYGQKAVKNSPFPRSYYRCTAQKCPVKKRVERSFQDAAVVITTYEGKHTHP 257
                       8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-35184259IPR003657WRKY domain
SuperFamilySSF1182904.84E-29191259IPR003657WRKY domain
PROSITE profilePS5081131.789194259IPR003657WRKY domain
SMARTSM007747.0E-40199258IPR003657WRKY domain
PfamPF031061.9E-26200257IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MSGASHHLSG DFFHFGHDDL ASLFASSTQM QQQQIQQPWP FLAADYLLQQ HASAPPPLDF  60
DDASPFDFDL PPAAEDQVKR ELLQAADGAG AVGMPGGGPG GTGTPHSVSM SSTSSGAGAC  120
AGGGEGESAG KSAKEEGEGD ESMEGSAAAK GGTGDGEDQK GNKGNNNGKG KKKGGAAEKD  180
KRPRQARFAF MTKSEVDHLE DGYRWRKYGQ KAVKNSPFPR SYYRCTAQKC PVKKRVERSF  240
QDAAVVITTY EGKHTHPIPA TLRGNQHHLH LLAQHPHLHN NNNPNYLLRM PAPPAAAAAF  300
FPPGPGASFL QQHAATLQAM QQQQQQHGLR GLLPAANMAG GVTITSSAAA TTTASMAVGS  360
GSSSASAPAP PLRMEHLMDY DGLLQDMLLP SSTFIQHNDD TTGNINNRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-26186259174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g16357.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418444e-92AY341844.1 Oryza sativa (japonica cultivar-group) WRKY3 mRNA, complete cds.
GenBankAY3418554e-92AY341855.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
GenBankAY8706044e-92AY870604.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233118.10.0probable WRKY transcription factor 48 isoform X2
TrEMBLA0A0Q3QTM80.0A0A0Q3QTM8_BRADI; Uncharacterized protein
STRINGBRADI2G16357.11e-132(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-47WRKY DNA-binding protein 71