PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g16150.1.p
Common NameBRADI_2g16150
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 563aa    MW: 58648.8 Da    PI: 7.1782
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g16150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30325383259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+
  Bradi2g16150.1.p 325 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITTYEGNHNHP 383
                       7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-34309385IPR003657WRKY domain
SuperFamilySSF1182909.29E-28317385IPR003657WRKY domain
PROSITE profilePS5081130.182319385IPR003657WRKY domain
SMARTSM007749.7E-37324384IPR003657WRKY domain
PfamPF031069.6E-27326383IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MESRPSSGFV AGVKRGSVGE MDFFETEMRK EKRDRKELAG AGDDDGLGIK NGDDLTIDMG  60
LHVGRRTTVR RNSGSEESTV DDGGVSSNDE LDHHHYMEAK AELAATKSEL ARVREENKRL  120
KSMLSSANSK CNSLHMHLTH LQQQQQRSSS SHGGHRVHEL LDPDKHHHLD QLPLPTTTAL  180
NMPRQFISLG SAPDEPPPLP ARASNGSLDC APSSSNPVGV DGMVIGSKAA DLVPVPPAFD  240
YHHHHGGGGH DSRAAAGAGG SSDPEQQSCW LPGGKVPKFL PPGIKGVPEP AAPTVQQQPP  300
EAAAAATMRK ARVSVRARSE AAMISDGCQW RKYGQKMAKG NPCPRAYYRC TMAAGCPVRK  360
QVQRCAEDRT VLITTYEGNH NHPLPPAAMA MATTTAAAAT MLLSGSMPSA DAAGGIMAGS  420
NFMARAVLPC SPSSVATISA SAPFPTVTLD LTAPPPLKEA LAEAAARPVV LPQLFGQKLY  480
DQAKLSAVQA VAGTNGKATV DGGGAQLADT VSAASAVIAS DPQFTRVLAA AITSYIGNSS  540
GSTGTAQPMA SGGGDSCSRD DE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-22315385877Probable WRKY transcription factor 4
2lex_A4e-22315385877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g16150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209868e-39AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149618e-39AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126138e-39CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231012.20.0probable WRKY transcription factor 31
TrEMBLI1HGA70.0I1HGA7_BRADI; Uncharacterized protein
STRINGBRADI2G16150.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.15e-62WRKY family protein