PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g15877.1.p
Common NameBRADI_2g15877, LOC100822317
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 227aa    MW: 24266.2 Da    PI: 7.1137
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g15877.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.21.2e-2697158159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDg +WrKYGqK++ g+++pr+Y+rCt++   gC+++k+v+r+a dp +++++Y+g+H++ 
  Bradi2g15877.1.p  97 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRntqGCQATKQVQRDAGDPLIFDVVYHGDHTCA 158
                       58***************************98889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-2784158IPR003657WRKY domain
SuperFamilySSF1182907.06E-2591158IPR003657WRKY domain
PROSITE profilePS5081121.36892155IPR003657WRKY domain
SMARTSM007748.8E-3997159IPR003657WRKY domain
PfamPF031061.6E-2598157IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSGGGGGSGL ATELDRLLEM ARELEARVER GSPATARDLC AALTASVDNA VRLAGTGTPR  60
GGGAIAAASG KAGRKRGAME KVRRQVRVSS VHDLAPLDDG LSWRKYGQKD ILGAKYPRAY  120
FRCTHRNTQG CQATKQVQRD AGDPLIFDVV YHGDHTCAQG LQHLQRHDQR QTAAAAAGQE  180
QQQQDEGLPV GAGGMQWPLD MGFEAQLDEL LFLDPSEFLQ PGFQNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-2097157868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g15877.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565888.11e-164probable WRKY transcription factor 41
TrEMBLI1HG781e-163I1HG78_BRADI; Uncharacterized protein
STRINGBRADI2G15877.11e-164(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-33WRKY family protein