PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g15405.1.p
Common NameBRADI_2g15405
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 310aa    MW: 32787.6 Da    PI: 6.2585
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g15405.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.35.7e-27167225259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       dD ++WrKYGqK++kgs++pr+YY+C+s   C ++k vers + p+v+++tY  +H h 
  Bradi2g15405.1.p 167 DDLWAWRKYGQKPIKGSPYPRGYYKCSSLkACAARKLVERSPDKPEVLIVTYIADHCHA 225
                       8**************************9989*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-26164227IPR003657WRKY domain
SuperFamilySSF1182903.79E-23166227IPR003657WRKY domain
SMARTSM007743.3E-31166226IPR003657WRKY domain
PfamPF031063.2E-22167224IPR003657WRKY domain
PROSITE profilePS5081128.001167227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDSDDWGLGA IVRSCAGAGV DAEATTPAPV ASRGRGVASM ELVGRPVSAP APSMTTASSS  60
SLHDVLEYLD LHHEQQLPRA PFSITPSTAM SREQRAPSEL VSLFSAASTS SGQLTPATKK  120
PQQGGGRKPG GRAHRPKRSK ISRKSQVKKV VREVPLVADG VISGDADDLW AWRKYGQKPI  180
KGSPYPRGYY KCSSLKACAA RKLVERSPDK PEVLIVTYIA DHCHAVPTLV NALAGTTVCQ  240
STSDEATGAA RREDSVDGSS SVAADEASSE LRSPVEMELD DFFGLFDEDL DSFFGDGDGD  300
DVLGRRVSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-17144228280Disease resistance protein RRS1
5w3x_D6e-17144228280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g15405.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315899.10.0WRKY transcription factor 22
TrEMBLI1HG210.0I1HG21_BRADI; Uncharacterized protein
STRINGBRADI2G15405.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Representative plantOGRP1140847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-32WRKY DNA-binding protein 35