PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g15360.1.p
Common NameBRADI_2g15360, LOC100836015
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 307aa    MW: 32344.7 Da    PI: 6.7359
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g15360.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46.2e-33163221159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK vk+s +prsYYrCt a+C vkk+vers++dp +v++tYeg+H+h+
  Bradi2g15360.1.p 163 LDDGYRWRKYGQKAVKNSSYPRSYYRCTAARCGVKKQVERSQQDPATVITTYEGQHQHP 221
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-34150223IPR003657WRKY domain
SuperFamilySSF1182901.24E-28156223IPR003657WRKY domain
PROSITE profilePS5081131.272158223IPR003657WRKY domain
SMARTSM007742.3E-37163222IPR003657WRKY domain
PfamPF031064.8E-26164221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MHSMSGSAAG GGYLGGQLVF GRLSGDQPAA GFGSSFDDTG GIFVSSQSSA PGAGGDGGGL  60
TTQPAYDCSS VTEYYLQGFL EHNYPLDAGD AAADAVKQPG SSAAEEEDEG DVDEAAASAD  120
HQKCRGNGLK KKQKKKEEEE KKGARRARGS RLAFATKSEV DHLDDGYRWR KYGQKAVKNS  180
SYPRSYYRCT AARCGVKKQV ERSQQDPATV ITTYEGQHQH PSPITCRLPP PLVGAGATML  240
AAYHSSLIAA AAHSQGQLLH HDIYTPSDVP AAPPLALLPQ AAAEYYDGPQ ALLPGFVVDN  300
RRHGQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-271562231077Probable WRKY transcription factor 4
2lex_A4e-271562231077Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g15360.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3672166e-66AK367216.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2052P23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754332.10.0probable WRKY transcription factor 48
TrEMBLA0A0Q3IFK70.0A0A0Q3IFK7_BRADI; Uncharacterized protein
STRINGBRADI2G15360.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.13e-40WRKY DNA-binding protein 23