PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g14890.1.p | ||||||||
Common Name | BRADI_2g14890, LOC100828074 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GATA | ||||||||
Protein Properties | Length: 232aa MW: 24377.2 Da PI: 7.2854 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 64.2 | 1.5e-20 | 136 | 170 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++TplWR+gp+g+k+LCnaCG++++k+++ Bradi2g14890.1.p 136 CANCGTSSTPLWRNGPRGPKSLCNACGIRFKKEER 170 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 14.193 | 130 | 166 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.3E-18 | 130 | 182 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.57E-13 | 132 | 169 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-16 | 134 | 170 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.9E-18 | 136 | 170 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.47E-14 | 136 | 167 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 136 | 161 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MLQQYCGGAM AAASTNTFSL FFPPVPAKAA AAGQQWPPTE QAASYEDLSS TVTSPSSPSS 60 DDSSAGSLLV DCTLSLGTPS SRAHRAAEPV SAAAESCYHY YQQQQQSMPA AGTGIGIGMG 120 GVWHEQQQLE EERRCCANCG TSSTPLWRNG PRGPKSLCNA CGIRFKKEER RAAETNGAGA 180 GGCGLLSPSH GAQRMIRAPR AAPEAPFLEW RLNAVPTSPA VWPERASLYQ Q* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250|UniProtKB:Q6L5E5}. | |||||
UniProt | Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269|PubMed:19337211}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g14890.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU722206 | 4e-54 | GU722206.1 Hordeum vulgare subsp. vulgare cultivar Bowman third outer glume (TRD) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565832.1 | 1e-169 | GATA transcription factor 15 | ||||
Swissprot | B8AX51 | 1e-32 | GAT15_ORYSI; GATA transcription factor 15 | ||||
Swissprot | Q6L5E5 | 1e-32 | GAT15_ORYSJ; GATA transcription factor 15 | ||||
TrEMBL | A0A0Q3QT27 | 1e-167 | A0A0Q3QT27_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G14890.1 | 1e-161 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 3e-23 | GATA transcription factor 20 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g14890.1.p |
Entrez Gene | 100828074 |
Publications ? help Back to Top | |||
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