PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g14890.1.p
Common NameBRADI_2g14890, LOC100828074
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 232aa    MW: 24377.2 Da    PI: 7.2854
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g14890.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.21.5e-20136170135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C+nCgt++TplWR+gp+g+k+LCnaCG++++k+++
  Bradi2g14890.1.p 136 CANCGTSSTPLWRNGPRGPKSLCNACGIRFKKEER 170
                       ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.193130166IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-18130182IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.57E-13132169No hitNo description
Gene3DG3DSA:3.30.50.101.1E-16134170IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.9E-18136170IPR000679Zinc finger, GATA-type
CDDcd002021.47E-14136167No hitNo description
PROSITE patternPS003440136161IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MLQQYCGGAM AAASTNTFSL FFPPVPAKAA AAGQQWPPTE QAASYEDLSS TVTSPSSPSS  60
DDSSAGSLLV DCTLSLGTPS SRAHRAAEPV SAAAESCYHY YQQQQQSMPA AGTGIGIGMG  120
GVWHEQQQLE EERRCCANCG TSSTPLWRNG PRGPKSLCNA CGIRFKKEER RAAETNGAGA  180
GGCGLLSPSH GAQRMIRAPR AAPEAPFLEW RLNAVPTSPA VWPERASLYQ Q*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250|UniProtKB:Q6L5E5}.
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269|PubMed:19337211}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g14890.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7222064e-54GU722206.1 Hordeum vulgare subsp. vulgare cultivar Bowman third outer glume (TRD) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565832.11e-169GATA transcription factor 15
SwissprotB8AX511e-32GAT15_ORYSI; GATA transcription factor 15
SwissprotQ6L5E51e-32GAT15_ORYSJ; GATA transcription factor 15
TrEMBLA0A0Q3QT271e-167A0A0Q3QT27_BRADI; Uncharacterized protein
STRINGBRADI2G14890.11e-161(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.13e-23GATA transcription factor 20
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]