PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g14132.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 1531aa    MW: 168726 Da    PI: 4.3993
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g14132.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH215.9e-079931014526
                        --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                        +C+ ++  G C+ G +C+F+H+
  Bradi2g14132.3.p  993 NCPSYMSKGSCSNGLSCHFNHP 1014
                        7********************8 PP
2zf-CCCH31.62.7e-1010521075427
                        ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                        ++C +++r+G C+yG rC+F+H++
  Bradi2g14132.3.p 1052 RNCVYYMRNGACRYGKRCHFNHPE 1075
                        78********************96 PP
3zf-CCCH31.92.2e-1013091335127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                        +++++C+f++++ +Ck+G+ C+F H++
  Bradi2g14132.3.p 1309 PGEPECPFYMKNRYCKFGAHCNFDHPK 1335
                        5799*********************96 PP
4zf-CCCH291.8e-0914491471325
                        S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH    3 telCrffartGtCkyGdrCkFaH 25  
                        +++C+f+++tG C++G+ C F H
  Bradi2g14132.3.p 1449 MPECPFYMKTGKCQFGSACEFRH 1471
                        799******************88 PP
5zf-CCCH18.83e-0614911516126
                        --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                        +++++C+++++ G+C++  +CkF+H+
  Bradi2g14132.3.p 1491 PGEPECSHYMKHGYCNFQMNCKFHHP 1516
                        5799*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.179881015IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.8459881016IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-59931014IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-610481075IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.55410481076IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-510511076IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-710521075IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-410541076IPR000571Zinc finger, CCCH-type
SMARTSM003561.112571284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.73212571285IPR000571Zinc finger, CCCH-type
SMARTSM003560.002213081335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.59613081336IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-813101335IPR000571Zinc finger, CCCH-type
SMARTSM003560.4513771404IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.43613771405IPR000571Zinc finger, CCCH-type
SMARTSM003560.003314461473IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.83114461474IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-714491472IPR000571Zinc finger, CCCH-type
SMARTSM003560.05214901517IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.70914901518IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1531 aa     Download sequence    Send to blast
MIGGGGGAAE EHDEEDQAAA TTRTPPSSPS PPTIVPASSP HGLGRRLLGS LIRGIGPSSS  60
PPPSPVPKVG LSLLLHLKPN PNTKSPPPPR HHTPSSSSDH HPTQPAAAPG ELLAAQGLLH  120
LALDPKHSCS TRKLTDQGTA ACQLGAADAV ALPEDRDQPL VDEQESVVHS HRQGGPARDA  180
NTVVDPSGTD TSAAPQGEET PVQEQDKLAP HQQQQDTCTW DGNAAEYKEE VVEQGVTDAH  240
TAIKDDVAQD CQEKVLQQCS GEQLRATRGD QELVVVEQDA TDQSDETTHD ISVENQEEVE  300
WCTAHDDAVE DQEAVGQDAM DKRCERTDGI AAKDQEEALE QWATYELQTT ENEDAKDDEQ  360
DVVEQGVVHG GVATMDSVAV RDHEVVLQTV TDEMCTAMDD TAVENQEKVG EQCTAFELGI  420
TENDDVVDEL SRATDGENLV VQEKDKLVAI GKQDIFSDGN GPGYLEEVLV VIDRQSTLKD  480
VQEKVLQQCT TSDQLGATRD DQEGLKQTDE TTYDIAVQNQ ERVEWHTAQD DTVEDQEVVE  540
QDAIDQRGES IDAIAVKDQE KAVEQCPTYE FGTTENDDAK DYQKVVEQSV IDKGGATMDD  600
TAINHQEEAV EKCVTYEGTT RNDDVNTEQE VVEQGIIDEE GPTMDDIAVK DHEVVVQSVI  660
GMRASIDNSV VENQGKELEQ CTTYHLGTTE IDDVVESQEV ADQGVVNEGG STMEDNALKD  720
HEVVEQSIID GMRAATDDIA VEDQEKVLEQ CAVDESRAPM DEYTVGEKEK VVEQGVTNKQ  780
GAMNMDVAVK DQEKVMKQGV IGNHGTVPID DIAVTDGEKA VGQFVSGAII TSKDEEEHNT  840
ARNQGVIDGN GRTKDDIDVE EHVITDKCTT ASDGIALEDQ KNESELCISD EHIASKDVVA  900
VYIQGDVLEQ RIGDEQGATK FTVEKQNDVQ ERVCHEWGAT EDDLVMNAAA SEGISGISSS  960
QSVSVTVNGS DGGIWKEKVK LCVNYPQRPG KLNCPSYMSK GSCSNGLSCH FNHPSLKAKP  1020
DVSWFPSEQD NHGVAEILEL NRVGLPIREG ARNCVYYMRN GACRYGKRCH FNHPEHVIDA  1080
HFSSPTGWED ASPASRHMKY SNHATLDDTS YSKKSFEGAT LDDTAHLKKS PEGATSDDTT  1140
HLKKSPEDAT SDDTSYSKRS FDHATLDDKL SSSEVLPANI LRMLLPPQKV PPSTERKVMK  1200
VKKSSNWSST SDDSDGCCSA DSSDGPLCKQ EHVDYPERPG RSDGPLYKQE HVDYSERPHK  1260
RECPFIKRFG DCKFESLCKY QHSKDRYPSR YHRKDPSQGG EVVEYPTRPG EPECPFYMKN  1320
RYCKFGAHCN FDHPKDLNPT TYSPTNEKKS VAGSDHHAST RITLKDPAPQ QQQYPERPGQ  1380
PDCRYYMQFG KCKYLFACIF HHPKDRLPSG WHPSDPAQSD QYDTWQPTNA SRIENFCQQE  1440
QIGAEIHGMP ECPFYMKTGK CQFGSACEFR HLKDTRSTTE VEEHAMYPER PGEPECSHYM  1500
KHGYCNFQMN CKFHHPGDRL CKKPVDSTYH *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g14132.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230944.20.0uncharacterized protein LOC100842536
RefseqXP_014753624.10.0uncharacterized protein LOC100842536
RefseqXP_014753625.10.0uncharacterized protein LOC100842536
TrEMBLA0A2K2D8J60.0A0A2K2D8J6_BRADI; Uncharacterized protein
STRINGMLOC_56050.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Representative plantOGRP1597633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.34e-39zinc finger nuclease 3