PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g14120.5.p
Common NameBRADI_2g14120
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 296aa    MW: 31610.5 Da    PI: 4.6029
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g14120.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011270291323
                       ETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                       C+ C+k+F++   L++H +  H
  Bradi2g14120.5.p 270 CKSCSKTFNSETALQSHSKAkH 291
                       *****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.177268295IPR007087Zinc finger, C2H2
PROSITE patternPS000280270291IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEFWGLELKP GQTVKVEPEP EHFLHLSQGA LGESKKDDKA TMFVKIDGKK LAIGTLSTDK  60
FPQIQFDLVF EKDFELSHSS KSSSVFFSGY KVFQPAEGDE MDFDSEGSEE SEEDEEEAVI  120
PVTKENGKAE GKQKQVKIDA GSSKAKPVLK AVGNKKGGDE SSDDDESDES DDDIADLSDD  180
DSGSEDGTSE ESDEEEEEET PKSTGKKRAA ETVLKTPASD KKAKAATPSG QKTGDKKGAV  240
HVATPHPAKK ASKTPATSDK SPKSGGSVAC KSCSKTFNSE TALQSHSKAK HNEAK*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g14120.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315864.10.0histone deacetylase HDT2 isoform X2
SwissprotQ9M4U53e-90HDT2_MAIZE; Histone deacetylase HDT2
TrEMBLI1HFP20.0I1HFP2_BRADI; Uncharacterized protein
STRINGBRADI2G14120.11e-157(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-20histone deacetylase 3