PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g14120.4.p | ||||||||
Common Name | BRADI_2g14120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 216aa MW: 23180.8 Da PI: 6.4068 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7.3e-05 | 190 | 211 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ C+k+F++ L++H + H Bradi2g14120.4.p 190 CKSCSKTFNSETALQSHSKAkH 211 *****************98777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03066 | 1.2E-6 | 3 | 118 | No hit | No description |
PROSITE profile | PS50157 | 11.177 | 188 | 215 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 190 | 211 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MEFWGLELKP GQTVKVEPEP EHFLHLSQGA LGESKKDDKA TMFVKIDGKK LAIGTLSTDK 60 FPQIQFDLVF EKDFELSHSS KSSSVFFSGY KVFQPAEGDE MDFDSEGSEE SEEDEEEAVI 120 PVTKENGKAE GKQKQVKIDA GSSKAATPSG QKTGDKKGAV HVATPHPAKK ASKTPATSDK 180 SPKSGGSVAC KSCSKTFNSE TALQSHSKAK HNEAK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g14120.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567768.1 | 8e-79 | histone deacetylase HDT2 isoform X1 | ||||
Refseq | XP_024315864.1 | 7e-79 | histone deacetylase HDT2 isoform X2 | ||||
Swissprot | Q9M4U5 | 2e-50 | HDT2_MAIZE; Histone deacetylase HDT2 | ||||
TrEMBL | A0A0Q3FYS0 | 1e-151 | A0A0Q3FYS0_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G14120.1 | 3e-78 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 1e-20 | histone deacetylase 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g14120.4.p |