PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g14120.1.p

Common Name

BRADI_2g14120, LOC100835633

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 297aa MW: 31738.7 Da PI: 4.6458

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g14120.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	271	292	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ C+k+F++ L++H + H Bradi2g14120.1.p 271 CKSCSKTFNSETALQSHSKAkH 292 *****************88777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.177	269	296	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	271	292	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MEFWGLELKP GQTVKVEPEP EHFLHLSQGA LGESKKDDKA TMFVKIDGKK LAIGTLSTDK 60 FPQIQFDLVF EKDFELSHSS KSSSVFFSGY KVFQPAEGDE MDFDSEGSEE SEEDEEEAVI 120 PVTKENGKAE GKQKQVKIDA GSSKAKPVLK AVGNKKGGDE SSDDDESDES DDDIADLSDD 180 DSGSEDGTSE ESDEEEEEET PKKSTGKKRA AETVLKTPAS DKKAKAATPS GQKTGDKKGA 240 VHVATPHPAK KASKTPATSD KSPKSGGSVA CKSCSKTFNS ETALQSHSKA KHNEAK*

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g14120.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003567768.1	0.0	histone deacetylase HDT2 isoform X1
Swissprot	Q9M4U5	7e-91	HDT2_MAIZE; Histone deacetylase HDT2
TrEMBL	I1HFN9	0.0	I1HFN9_BRADI; Uncharacterized protein
STRING	BRADI2G14120.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2204	30	65
Representative plant	OGRP1053	11	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	2e-20	histone deacetylase 3

Link Out ? help Back to Top
Phytozome	Bradi2g14120.1.p
Entrez Gene	100835633