PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g13860.1.p
Common NameBRADI_2g13860, LOC100840715
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 277aa    MW: 29572.4 Da    PI: 8.4776
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g13860.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.7e-12125169347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Bradi2g13860.1.p 125 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 169
                       7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.773161IPR017877Myb-like domain
SMARTSM007174.7563IPR001005SANT/Myb domain
PROSITE profilePS5129416.873118174IPR017930Myb domain
SuperFamilySSF466896.32E-17120175IPR009057Homeodomain-like
SMARTSM007172.3E-10122172IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.6E-17122172IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.6E-11123168IPR009057Homeodomain-like
CDDcd001677.88E-10125170No hitNo description
PfamPF002496.5E-11125169IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSSLQAAAWS KEEDKAFENA VAAAAPPPLD GLPEDEWFVA LAASVPARST EEVRRHYEAL  60
VEDVGAIEAG RVPLPRYAGE EPSAAPPDGH KNGGGGAGHR REDRKSFDSG KSCSKAEQER  120
RKGIPWTEEE HRLFLLGLDK FGKGDWRSIS RNFVISRTPT QVASHAQKYF IRLNSMNRDR  180
RRSSIHDITS ITAGEVVAQQ GPITGQAAGP PGMKHLGPGP PPMPGMGMYG GAPMGHPVAP  240
GHMVPAAVGT PVMFPPGHSP YVMPVGYPAP QAKMHQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g13860.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519481e-162JF951948.1 Triticum aestivum clone TaMYB65 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565794.10.0transcription factor MYBS1
SwissprotB8A9B21e-122MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH591e-122MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLI1HFM90.0I1HFM9_BRADI; Uncharacterized protein
STRINGBRADI2G13860.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94663041
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.19e-59MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]