PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g12691.1.p
Common NameBRADI_2g12691
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 646aa    MW: 75489.2 Da    PI: 6.5543
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g12691.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.22.3e-1753137190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fY+ YAk+ GF v++++ ++  ++++    t+ Cs++gk++ ++k+   + +++++tr++C ak++   +  +k+++t++ l+HnH+ +
  Bradi2g12691.1.p  53 RFYKGYAKTKGFGVVRRTARHG-DDRKLNYFTLACSRQGKAQYSSKN---SFNPNPSTRMQCPAKVNFPCR-GEKFCITSVTLDHNHPTS 137
                       5****************99998.77779***************9999...99*****************99.9**************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1453137IPR004330FAR1 DNA binding domain
PfamPF105513.1E-38258352IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MESNLPSDEV ADQHNGVFHE DDEDAFILEE IGDSLDDQPL KGIMFDSEDD AVRFYKGYAK  60
TKGFGVVRRT ARHGDDRKLN YFTLACSRQG KAQYSSKNSF NPNPSTRMQC PAKVNFPCRG  120
EKFCITSVTL DHNHPTSPSK SRFLRSHKKL DLHAKRMLEL NDQAGIRMNK NFGSLVMEAG  180
GYEQLEFGEK ECRNYLPEKR RLKLGAGDAH AVYQYFLRMQ SKDPDFFHVM DVAEDERLRN  240
VFWADARSRA TYESYWDVIT FDTTYLTNKY SMLFAPFVGV NHHGESVLLG CGLLSNEDTE  300
TFVWLFKSWL WCMSNKAPNA IITDKCKAMQ NAIEKVFPQA RHRWCIWHIM KKIPEKLSGY  360
EKYENIKYTM SNAVYDSLTK HDFDEAWLKM IKKYELQDNE WLVGLYGNKY RWVPAYVKDT  420
FWAGMSSTQR CESVNAFFDG YVNARTTLKQ FVEQYENALR DKVEKENKAD SKSFQEVIPC  480
ITHYDFERQF QETYTNAKFK TQVNKEGSLF TFRVREDRKI FFEGEDGEIK DKRIISEFTV  540
LFDQGECDVH HILSVLALME ITEVPSRYIL QQWRKDFKRK HTFIKCSYDD MLNTPLVQCY  600
DNLCKQSDAL YASVMDGLGQ LQIKIDAHRA SQEVQEEDQT KKNEET
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g12691.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756066.20.0protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A0Q3FXT70.0A0A0Q3FXT7_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI3G51320.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-111FAR1-related sequence 5