PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g12030.3.p
Common NameBRADI_2g12030, LOC100835008
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 539aa    MW: 57624.6 Da    PI: 6.7085
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g12030.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.31.3e-20102220186
          trihelix   1 rWtkqevlaLiearremeerlrrgk................................lkkplWeevskkmrergferspkqCkekwenlnkry 61 
                       +Wt+ +v++Li ++ + +++ + +                                 +kk++W++vs+ m e+gf++sp+qC++k+++lnkry
  Bradi2g12030.3.p 102 KWTDAMVRLLIMVVYNAGDDGEGAVaaavggggggggsraaahghghgsataaahaqQKKGKWKSVSRTMGEHGFTVSPQQCEDKFNDLNKRY 194
                       699999999999888555544432223344445555555555555666666666666************************************ PP

          trihelix  62 kkikegekkr.tsessstcpyfdqle 86 
                       k++ +  +++ ++ ++++ +++d ++
  Bradi2g12030.3.p 195 KRVVDLLGRGkACAVVESPALLDAMD 220
                       ********996699999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.0E-17100245No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MERGDGAAAG GGGMGPRGAP AAMLGMGMQQ FVSQPHAAAP VFQQPEHLHG GVFGQHHHQP  60
VPAPARAGGG HHEEEAMGHG AGNDGVAAQQ QQQPGGLWSR MKWTDAMVRL LIMVVYNAGD  120
DGEGAVAAAV GGGGGGGGSR AAAHGHGHGS ATAAAHAQQK KGKWKSVSRT MGEHGFTVSP  180
QQCEDKFNDL NKRYKRVVDL LGRGKACAVV ESPALLDAMD ELPPRAKEEA RKLLSSKHLF  240
FREMCNYHNS PHPHAAAAVT VASHHGAAVH DHEGAAACFH HPQPVACASS AAALHALAPS  300
PAMMNSSTRT EGDEEDDDSE NAHPRTSNEV EEMDEEDVLD DEEEQAPGIK SKHRRFHSLN  360
SNGFPKRRRG ESSTMEAEED GNNNDNTGAG EGEAPSSAGV QHLQSELAAA AGGGDPEQAR  420
RWMRRRALAV EEQLLACDYR EYKLHRQRLK WERFCAGKER EMELAKLRNE RARIDGRRML  480
LMIQHKEMDL LRGSSTAGEA CNNSSSVDHN PRQTPPFSAF QQQQQLGSSP STAGGHHS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g12030.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2890282e-76AK289028.1 Oryza sativa Japonica Group cDNA, clone: J090090M16, full insert sequence.
GenBankAP0034142e-76AP003414.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1153F04.
GenBankAP0039212e-76AP003921.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028G04.
GenBankAP0149572e-76AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-76CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753555.10.0uncharacterized protein LOC100835008
TrEMBLA0A2K2D8530.0A0A2K2D853_BRADI; Uncharacterized protein
STRINGBRADI2G12030.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.16e-43sequence-specific DNA binding transcription factors