PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g11890.1.p
Common NameBRADI_2g11890, LOC100837070
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 198aa    MW: 21453.1 Da    PI: 6.5433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g11890.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-194999256
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                      +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  Bradi2g11890.1.p 49 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 99
                      6********.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-2249107IPR016177DNA-binding domain
SMARTSM003802.3E-3649112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-3249107IPR001471AP2/ERF domain
PROSITE profilePS5103224.48749106IPR001471AP2/ERF domain
CDDcd000181.73E-1649107No hitNo description
PfamPF008473.8E-135098IPR001471AP2/ERF domain
PRINTSPR003673.6E-115061IPR001471AP2/ERF domain
PRINTSPR003673.6E-117288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MCGGAIIYDY IPAPRRVSAA DFWPDADDSD AHSTAPHKAR RAKREKRNQY RGIRQRPWGK  60
WAAEIRDPVK GVRVWLGTYP TAEAAARAYD RAARRIRGAK AKVNFPNEEL LLASSPATAA  120
AAAPPAVLSS FKKEEDAEFG SVACSGEAKE LSEELMAYEN YMSFLGVPYM QGGDTAAPAA  180
EEAPAPAPAA LWSFEDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2246106263ATERF1
3gcc_A2e-2246106263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g11890.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0944081e-128FP094408.1 Phyllostachys edulis cDNA clone: bphylf025f05, full insert sequence.
GenBankFP1003901e-128FP100390.1 Phyllostachys edulis cDNA clone: bphylf045j15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567604.11e-140ethylene-responsive transcription factor ERF071
TrEMBLI1HEY11e-139I1HEY1_BRADI; Uncharacterized protein
STRINGBRADI2G11890.11e-140(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-29ERF family protein